Query gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 22:31:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780155.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1zps_A PRA-CH, phosphoribosyl 10.8 45 0.0013 16.6 -0.7 11 16-26 37-47 (105)
2 >2cw8_A Endonuclease PI-pkoii; 7.1 1.3E+02 0.0039 14.5 0.4 15 14-30 10-24 (26)
3 >3htk_B Structural maintenance 5.8 1.7E+02 0.005 14.0 0.4 17 12-28 56-72 (73)
4 >1h16_A Formate acetyltransfer 5.3 1.5E+02 0.0045 14.2 -0.1 12 17-28 45-56 (72)
5 >1z1y_A Ookinete surface prote 5.0 1.2E+02 0.0034 14.8 -0.9 13 14-26 25-37 (46)
6 >2qkp_A Uncharacterized protei 4.8 98 0.0029 15.1 -1.4 14 18-31 13-26 (28)
7 >2hsg_A Glucose-resistance amy 4.2 3.1E+02 0.0092 12.8 0.8 13 13-25 109-121 (124)
8 >2fft_A Thylakoid soluble phos 3.9 3.7E+02 0.011 12.5 1.0 17 12-28 14-30 (84)
9 >3cxb_A Protein SIFA; SIFA, SK 3.9 2.2E+02 0.0065 13.5 -0.2 24 8-31 34-57 (198)
10 >1oya_A OLD yellow enzyme; oxi 3.5 2.7E+02 0.0079 13.1 -0.0 10 19-28 22-31 (43)
No 1
>>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} (A:1-105)
Probab=10.80 E-value=45 Score=16.62 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=7.8
Q ss_pred HHHHHHCCHHH
Q ss_conf 45544251023
Q gi|254780155|r 16 CILGYMNKEEE 26 (31)
Q Consensus 16 cilgymnkeee 26 (31)
-.++|||+|.-
T Consensus 37 LMlaymn~eAl 47 (105)
T 1zps_A 37 LMVAYMNREAL 47 (105)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
T ss_conf 99997799999
No 2
>>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis KOD1} PDB: 2cw7_A (A:129-148,A:270-275)
Probab=7.07 E-value=1.3e+02 Score=14.48 Aligned_cols=15 Identities=53% Similarity=0.784 Sum_probs=9.3
Q ss_pred HHHHHHHHCCHHHHCCC
Q ss_conf 45455442510231016
Q gi|254780155|r 14 MDCILGYMNKEEEKLIL 30 (31)
Q Consensus 14 mdcilgymnkeeeklil 30 (31)
..-.|| ..||||||-
T Consensus 10 velllg--tpeeeklie 24 (26)
T 2cw8_A 10 VELLLG--TPEEEKLIE 24 (26)
T ss_dssp HHHHHT--SCGGGSEEE
T ss_pred HHHHHC--CCCCCCCCC
T ss_conf 555404--651005554
No 3
>>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} (B:)
Probab=5.81 E-value=1.7e+02 Score=14.01 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=13.0
Q ss_pred CCHHHHHHHHCCHHHHC
Q ss_conf 85454554425102310
Q gi|254780155|r 12 NSMDCILGYMNKEEEKL 28 (31)
Q Consensus 12 nsmdcilgymnkeeekl 28 (31)
-||.-++|+.|..|+.|
T Consensus 56 ~SmndVIgfFn~kE~eL 72 (73)
T 3htk_B 56 VSMNDVIGFFNEREADL 72 (73)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 00999999966557644
No 4
>>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme, acyltransferase, acetylation; HET: COA PG4; 1.53A {Escherichia coli} (A:41-112)
Probab=5.33 E-value=1.5e+02 Score=14.23 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=8.5
Q ss_pred HHHHHCCHHHHC
Q ss_conf 554425102310
Q gi|254780155|r 17 ILGYMNKEEEKL 28 (31)
Q Consensus 17 ilgymnkeeekl 28 (31)
--||.+|+.|+.
T Consensus 45 ~pGYIdkd~E~I 56 (72)
T 1h16_A 45 DAGYINKQLEKI 56 (72)
T ss_dssp CCCCSCTTTCSS
T ss_pred CCCCCCCHHHHH
T ss_conf 787424035676
No 5
>>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A (A:52-97)
Probab=5.02 E-value=1.2e+02 Score=14.76 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=9.9
Q ss_pred HHHHHHHHCCHHH
Q ss_conf 4545544251023
Q gi|254780155|r 14 MDCILGYMNKEEE 26 (31)
Q Consensus 14 mdcilgymnkeee 26 (31)
-+||-||.-||..
T Consensus 25 C~CIegYTlkeg~ 37 (46)
T 1z1y_A 25 CGCIEGYTLXEDT 37 (46)
T ss_dssp EEECTTEEEETTE
T ss_pred CCCCCCCCCCCCC
T ss_conf 4346211155211
No 6
>>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.75A {Streptococcus mutans UA159} (A:1-28)
Probab=4.76 E-value=98 Score=15.09 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=10.3
Q ss_pred HHHHCCHHHHCCCC
Q ss_conf 54425102310169
Q gi|254780155|r 18 LGYMNKEEEKLILD 31 (31)
Q Consensus 18 lgymnkeeeklild 31 (31)
-||..-|+..|||+
T Consensus 13 ngylsveqanliln 26 (28)
T 2qkp_A 13 NGYLSVEQANLILN 26 (28)
T ss_dssp TEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89974999999998
No 7
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:59-159,A:294-316)
Probab=4.18 E-value=3.1e+02 Score=12.78 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=8.6
Q ss_pred CHHHHHHHHCCHH
Q ss_conf 5454554425102
Q gi|254780155|r 13 SMDCILGYMNKEE 25 (31)
Q Consensus 13 smdcilgymnkee 25 (31)
.|.-.-.|||||.
T Consensus 109 ~~~~~~~~~~~~~ 121 (124)
T 2hsg_A 109 AMRLLTKYMNKET 121 (124)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999962999
No 8
>>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} (A:)
Probab=3.87 E-value=3.7e+02 Score=12.45 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=12.8
Q ss_pred CCHHHHHHHHCCHHHHC
Q ss_conf 85454554425102310
Q gi|254780155|r 12 NSMDCILGYMNKEEEKL 28 (31)
Q Consensus 12 nsmdcilgymnkeeekl 28 (31)
.-.|.|+|.+.||+.-+
T Consensus 14 gl~d~i~G~l~KedQ~~ 30 (84)
T 2fft_A 14 SFVDWLLGKITKEDQFY 30 (84)
T ss_dssp SHHHHHHHHHSCCCCSC
T ss_pred CHHHHHHCCCCCCCCCC
T ss_conf 23888751464533021
No 9
>>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A (A:139-336)
Probab=3.86 E-value=2.2e+02 Score=13.48 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=17.5
Q ss_pred EEECCCHHHHHHHHCCHHHHCCCC
Q ss_conf 785485454554425102310169
Q gi|254780155|r 8 IYLSNSMDCILGYMNKEEEKLILD 31 (31)
Q Consensus 8 iylsnsmdcilgymnkeeeklild 31 (31)
+.+|-+.|-|.||...+-+|--||
T Consensus 34 p~lSV~L~nI~~~L~s~~~kgnL~ 57 (198)
T 3cxb_A 34 PILSVPLDNIEGYLYTELRKGHLD 57 (198)
T ss_dssp CCEEEECTHHHHHHHHTTSSSCTT
T ss_pred CEEEEEHHHHHHHHHHHHHCCCHH
T ss_conf 258767889899999999717827
No 10
>>1oya_A OLD yellow enzyme; oxidoreductase (flavoprotein); HET: FMN; 2.00A {Saccharomyces pastorianus} (A:121-163)
Probab=3.50 E-value=2.7e+02 Score=13.09 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=6.7
Q ss_pred HHHCCHHHHC
Q ss_conf 4425102310
Q gi|254780155|r 19 GYMNKEEEKL 28 (31)
Q Consensus 19 gymnkeeekl 28 (31)
-||+.|.|..
T Consensus 22 vYm~~e~ee~ 31 (43)
T 1oya_A 22 VFMDAEQEAK 31 (43)
T ss_dssp CCSCHHHHHH
T ss_pred CCCCCCCCCC
T ss_conf 6677777666
Done!