Query         gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 15:00:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780155.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1zps_A PRA-CH, phosphoribosyl-   7.0      57  0.0024   15.5  -0.7   10   17-26     38-47  (138)
  2 2fft_A Thylakoid soluble phosp   6.4 1.3E+02  0.0056   13.8   0.9   16   12-27     14-29  (84)
  3 3htk_B Structural maintenance    5.7 1.2E+02  0.0051   14.0   0.4   17   12-28     56-72  (73)
  4 1y1u_A Signal transducer and a   3.4 1.2E+02  0.0052   13.9  -1.0   16   15-30    465-480 (585)
  5 2eqq_A GBP, growth-blocking pe   3.2 1.6E+02  0.0068   13.4  -0.6   13   13-25      4-16  (28)
  6 1b1v_A PSP1, protein (plasmato   3.2 1.5E+02  0.0063   13.5  -0.7   13   13-25      4-16  (26)
  7 1vyi_A RNA polymerase alpha su   3.0 2.7E+02   0.011   12.4   0.4   13   13-25     73-85  (112)
  8 2hql_A Hypothetical protein Mg   2.7 3.7E+02   0.016   11.7   1.5   18    1-18     43-60  (110)
  9 2ane_A ATP-dependent protease    2.5 2.8E+02   0.012   12.3   0.0   14   14-27      1-14  (125)
 10 3cbn_A Conserved protein MTH63   2.4 2.2E+02  0.0092   12.8  -0.7   11    9-19     33-43  (151)

No 1  
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=7.03  E-value=57  Score=15.48  Aligned_cols=10  Identities=40%  Similarity=0.806  Sum_probs=6.5

Q ss_pred             HHHHHCCHHH
Q ss_conf             5544251023
Q gi|254780155|r   17 ILGYMNKEEE   26 (31)
Q Consensus        17 ilgymnkeee   26 (31)
                      .++|||+|.-
T Consensus        38 MlaymN~eAl   47 (138)
T 1zps_A           38 MVAYMNREAL   47 (138)
T ss_dssp             EEEEECHHHH
T ss_pred             EEEECCHHHH
T ss_conf             9997699999


No 2  
>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1
Probab=6.36  E-value=1.3e+02  Score=13.78  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=12.5

Q ss_pred             CCHHHHHHHHCCHHHH
Q ss_conf             8545455442510231
Q gi|254780155|r   12 NSMDCILGYMNKEEEK   27 (31)
Q Consensus        12 nsmdcilgymnkeeek   27 (31)
                      +-.|.|||.|.||+.-
T Consensus        14 gl~D~IlGfi~KeDQ~   29 (84)
T 2fft_A           14 SFVDWLLGKITKEDQF   29 (84)
T ss_dssp             SHHHHHHHHHSCCCCS
T ss_pred             CHHHHHHHHCCCCCCC
T ss_conf             2688876422100100


No 3  
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=5.68  E-value=1.2e+02  Score=13.95  Aligned_cols=17  Identities=35%  Similarity=0.706  Sum_probs=13.0

Q ss_pred             CCHHHHHHHHCCHHHHC
Q ss_conf             85454554425102310
Q gi|254780155|r   12 NSMDCILGYMNKEEEKL   28 (31)
Q Consensus        12 nsmdcilgymnkeeekl   28 (31)
                      -||.-++|+.|..|+.|
T Consensus        56 ~SmndVIgfFn~kE~eL   72 (73)
T 3htk_B           56 VSMNDVIGFFNEREADL   72 (73)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             00999999966557644


No 4  
>1y1u_A Signal transducer and activator of transcription 5A; STAT, DNA-binding, SH2 domain, transcription regulation, signaling protein; 3.21A {Mus musculus}
Probab=3.42  E-value=1.2e+02  Score=13.94  Aligned_cols=16  Identities=38%  Similarity=0.744  Sum_probs=9.5

Q ss_pred             HHHHHHHCCHHHHCCC
Q ss_conf             5455442510231016
Q gi|254780155|r   15 DCILGYMNKEEEKLIL   30 (31)
Q Consensus        15 dcilgymnkeeeklil   30 (31)
                      .||.|++.|+.++-+|
T Consensus       465 g~i~gf~~k~~~~~~l  480 (585)
T 1y1u_A          465 GAILGFVNKQQAHDLL  480 (585)
T ss_dssp             TCCCBSCCHHHHHHHH
T ss_pred             CCEEEEECHHHHHHHH
T ss_conf             7457750389999985


No 5  
>2eqq_A GBP, growth-blocking peptide, long form; cytokine; NMR {Mythimna separata} SCOP: j.8.1.1 PDB: 2eqt_A
Probab=3.24  E-value=1.6e+02  Score=13.39  Aligned_cols=13  Identities=38%  Similarity=0.859  Sum_probs=9.4

Q ss_pred             CHHHHHHHHCCHH
Q ss_conf             5454554425102
Q gi|254780155|r   13 SMDCILGYMNKEE   25 (31)
Q Consensus        13 smdcilgymnkee   25 (31)
                      +-.|+-|||....
T Consensus         4 ~ggc~~gymrt~d   16 (28)
T 2eqq_A            4 SGGCVAGYMRTPD   16 (28)
T ss_dssp             SCCCSTTEEECTT
T ss_pred             CCCCCCCEEECCC
T ss_conf             4652236068788


No 6  
>1b1v_A PSP1, protein (plasmatocyte-spreading peptide); insect cytokine, EGF-like; NMR {Synthetic} SCOP: j.8.1.1 PDB: 1b5n_A 1bqf_A 2eqh_A 2dj9_A 1hrl_A 1v28_A 2djc_A 1irr_A
Probab=3.23  E-value=1.5e+02  Score=13.54  Aligned_cols=13  Identities=31%  Similarity=0.830  Sum_probs=9.2

Q ss_pred             CHHHHHHHHCCHH
Q ss_conf             5454554425102
Q gi|254780155|r   13 SMDCILGYMNKEE   25 (31)
Q Consensus        13 smdcilgymnkee   25 (31)
                      +-.|+-|||....
T Consensus         4 ~ggc~~gymrt~d   16 (26)
T 1b1v_A            4 NGGCLAGYMRTAD   16 (26)
T ss_dssp             SSSCSSSCEECSS
T ss_pred             CCCCCCCEEECCC
T ss_conf             4652237068888


No 7  
>1vyi_A RNA polymerase alpha subunit; transferase, replication, transcription, RNA-directed RNA polymerase, phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP: d.293.1.1
Probab=3.01  E-value=2.7e+02  Score=12.36  Aligned_cols=13  Identities=23%  Similarity=0.828  Sum_probs=8.6

Q ss_pred             CHHHHHHHHCCHH
Q ss_conf             5454554425102
Q gi|254780155|r   13 SMDCILGYMNKEE   25 (31)
Q Consensus        13 smdcilgymnkee   25 (31)
                      ...||||+..-..
T Consensus        73 PLRCiLG~Va~~~   85 (112)
T 1vyi_A           73 PLRCVLGWVALAN   85 (112)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCC
T ss_conf             5524221000144


No 8  
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=2.74  E-value=3.7e+02  Score=11.71  Aligned_cols=18  Identities=39%  Similarity=0.650  Sum_probs=11.9

Q ss_pred             CEEEEEEEEECCCHHHHH
Q ss_conf             915889878548545455
Q gi|254780155|r    1 MFTILYVIYLSNSMDCIL   18 (31)
Q Consensus         1 mftilyviylsnsmdcil   18 (31)
                      .||-.||||-.....--|
T Consensus        43 ~ftdyyviyan~ql~~el   60 (110)
T 2hql_A           43 LFTDYYVIYANGQLAYEL   60 (110)
T ss_dssp             EEEEEEEEEEEHHHHHHH
T ss_pred             EEEEEEEEEECCCHHHHH
T ss_conf             210689999888224778


No 9  
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=2.54  E-value=2.8e+02  Score=12.26  Aligned_cols=14  Identities=29%  Similarity=0.207  Sum_probs=8.2

Q ss_pred             HHHHHHHHCCHHHH
Q ss_conf             45455442510231
Q gi|254780155|r   14 MDCILGYMNKEEEK   27 (31)
Q Consensus        14 mdcilgymnkeeek   27 (31)
                      ||-+.+-||.|+.+
T Consensus         1 ~~~~~~~m~~e~~~   14 (125)
T 2ane_A            1 MHHHHHHMNPERSE   14 (125)
T ss_dssp             --------------
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             96423343867576


No 10 
>3cbn_A Conserved protein MTH639; RP-A, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.63A {Methanothermobacterthermautotrophicus str}
Probab=2.38  E-value=2.2e+02  Score=12.78  Aligned_cols=11  Identities=36%  Similarity=0.963  Sum_probs=0.0

Q ss_pred             EECCCHHHHHH
Q ss_conf             85485454554
Q gi|254780155|r    9 YLSNSMDCILG   19 (31)
Q Consensus         9 ylsnsmdcilg   19 (31)
                      ||+-.-|||+|
T Consensus        33 ~LT~rGDCIIg   43 (151)
T 3cbn_A           33 EIGETADCIIG   43 (151)
T ss_dssp             CCCTTCTTEEE
T ss_pred             CCCCCCCEEEE
T ss_conf             86789888999


Done!