BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780155|ref|YP_003064568.1| hypothetical protein
CLIBASIA_00190 [Candidatus Liberibacter asiaticus str. psy62]
         (31 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 31

 Score = 63.2 bits (152), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 31/31 (100%), Positives = 31/31 (100%)

Query: 1  MFTILYVIYLSNSMDCILGYMNKEEEKLILD 31
          MFTILYVIYLSNSMDCILGYMNKEEEKLILD
Sbjct: 1  MFTILYVIYLSNSMDCILGYMNKEEEKLILD 31


>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 21.2 bits (43), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 5   LYVIYLSNSMDCI 17
           LY IY SN++DC 
Sbjct: 564 LYDIYKSNTVDCF 576


>gi|254781119|ref|YP_003065532.1| hypothetical protein CLIBASIA_05105 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score = 20.8 bits (42), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 7  VIYLSNSMDCILGYMNKEEE 26
          V  L   +DC++   NK++ 
Sbjct: 13 VTLLKQKVDCLIAQFNKQQS 32


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.327    0.144    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,783
Number of Sequences: 1233
Number of extensions: 334
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 31
length of database: 328,796
effective HSP length: 6
effective length of query: 25
effective length of database: 321,398
effective search space:  8034950
effective search space used:  8034950
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.2 bits)
S2: 31 (16.5 bits)