RPSBLAST alignment of GI: 254780156 and protein with PDBid: 1vdw
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1 Length = 254
Score = 100 bits (250), Expect = 3e-22
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 20/264 (7%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGP-SDFVMKSHSKCQEIIYQELLG 59
MS + + + FG + + P D + II +
Sbjct: 1 MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKD 60
Query: 60 ARPKYGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFN 119
S + Q S +VDPL+G NF IP F +S+A+ +++ I + I+
Sbjct: 61 LGV--NVVSEEIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYE 118
Query: 120 PITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGV 179
PI + LY G GS+LN +I+V + + +I+D+
Sbjct: 119 PIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTK---------GKGTKIIDKVKRT 169
Query: 180 RSFGSEALDLAYIAAGRFDGFL--GKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETK 237
R+ G+ AL+LAY+A G D + L +AAG++I EAG D GK++
Sbjct: 170 RTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFS 229
Query: 238 S------IISGNMPIHEQLLAIIN 255
+ I + N + E +L I
Sbjct: 230 ATEKVNIIAANNEELLETILRSIE 253