RPSBLAST alignment of GI: 254780156 and protein with PDBid: 1vdw

>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1 Length = 254
 Score =  100 bits (250), Expect = 3e-22
 Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 20/264 (7%)

Query: 1   MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGP-SDFVMKSHSKCQEIIYQELLG 59
           MS      + +         +   FG  +  +     P  D         + II  +   
Sbjct: 1   MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKD 60

Query: 60  ARPKYGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFN 119
                   S     + Q S    +VDPL+G  NF   IP F +S+A+  +++ I + I+ 
Sbjct: 61  LGV--NVVSEEIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYE 118

Query: 120 PITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGV 179
           PI + LY    G GS+LN  +I+V       +                +  +I+D+    
Sbjct: 119 PIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTK---------GKGTKIIDKVKRT 169

Query: 180 RSFGSEALDLAYIAAGRFDGFL--GKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETK 237
           R+ G+ AL+LAY+A G  D  +     L    +AAG++I  EAG    D  GK++     
Sbjct: 170 RTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFS 229

Query: 238 S------IISGNMPIHEQLLAIIN 255
           +      I + N  + E +L  I 
Sbjct: 230 ATEKVNIIAANNEELLETILRSIE 253