RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780156|ref|YP_003064569.1| putative
inositol-1-monophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
(256 letters)
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 234 bits (597), Expect = 2e-62
Identities = 132/260 (50%), Positives = 179/260 (68%), Gaps = 5/260 (1%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGA 60
M +SA++NVMV AA+KAG+ L RD+GEVQ+LQVS KGP+D+V ++ K ++II+ EL A
Sbjct: 5 MPQSAVMNVMVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKA 64
Query: 61 RPKYGFYS-GGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFN 119
RPK+GF + +G+DS R+IVDPL+G TNF + IP F +SIALE +I+A VI+N
Sbjct: 65 RPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYN 124
Query: 120 PITDELYTAERGIGSFLNDRRIRVSSRRILSNSII----CYATFKRNSRFLMQLCRIMDE 175
PI DEL+TAERG G+F NDRR RVS+RR L + +I + + +L++L +M E
Sbjct: 125 PINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAE 184
Query: 176 AVGVRSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAE 235
G+R FG+ ALDLAY+AAGR DGF L IW +AAG+L++ EAGGF TD G N
Sbjct: 185 VSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFR 244
Query: 236 TKSIISGNMPIHEQLLAIIN 255
K+II+GN I +L +
Sbjct: 245 KKNIIAGNEHIRIKLERALK 264
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 167 bits (422), Expect = 3e-42
Identities = 87/256 (33%), Positives = 146/256 (57%), Gaps = 5/256 (1%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYG 65
+LN+ V AA KAG +++++ ++ S+KG +DFV + +I + + P++
Sbjct: 4 MLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHT 63
Query: 66 FYSGGKAYV-GQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDE 124
+ + G D +W++DPL+G TNF +PHF +SIA+ +V+++P+ +E
Sbjct: 64 IITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNE 123
Query: 125 LYTAERGIGSFLNDRRIRVSSRRILSNSI----ICYATFKRNSRFLMQLCRIMDEAVGVR 180
L+TA RG G+ LN R+R S+ R L +I + + + ++ + ++ +E R
Sbjct: 124 LFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFNECADFR 183
Query: 181 SFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKSII 240
+ GS ALDLAY+AAGR DGF GL W AAG L++ EAGG +DF G + T +I+
Sbjct: 184 ATGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGHNYMLTGNIV 243
Query: 241 SGNMPIHEQLLAIIND 256
+GN + + +LA + D
Sbjct: 244 AGNPRVVKAMLANMRD 259
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.60A {Aquifex aeolicus VF5}
Length = 264
Score = 148 bits (374), Expect = 1e-36
Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 7/256 (2%)
Query: 4 SALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPK 63
L V AAL G+ L +FG+V+ + KG DFV +E I + +L P
Sbjct: 5 KKYLEVAKIAALAGGQVLKENFGKVKKENIEEKGEKDFVSYVDKTSEERIKEVILKFFPD 64
Query: 64 YGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITD 123
+ G S RW +DPL+G N+ P F +S+ L + +E I ++ P D
Sbjct: 65 HEVVGEEMGAEGSGSEYRWFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAVYLPYFD 124
Query: 124 ELYTAERGIGSFLNDRRIRVSSRRILSNSIICYA----TFKRNSRFLMQLCRIMDEAVGV 179
+LY +G+G+++N +RI+V L ++ + Y + + S +L + E +
Sbjct: 125 KLYWGAKGLGAYVNGKRIKVKDNESLKHAGVVYGFPSRSRRDISIYLNIFKDVFYEVGSM 184
Query: 180 RSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKSI 239
R G+ A+DL +A G FDG + + W + AGL+I+ EAGG T G+ G I
Sbjct: 185 RRPGAAAVDLCMVAEGIFDGMMEFEMKPWDITAGLVILKEAGGVYTLV-GEPFG--VSDI 241
Query: 240 ISGNMPIHEQLLAIIN 255
I+GN +H+ +L +
Sbjct: 242 IAGNKALHDFILQVAK 257
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
hydrolase; HET: IPD; 2.30A {Methanocaldococcus
jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Length = 252
Score = 146 bits (368), Expect = 7e-36
Identities = 52/252 (20%), Positives = 98/252 (38%), Gaps = 17/252 (6%)
Query: 12 SAALKAGKFLSRDFGEVQDLQVSRKGPS-DFVMKSHSKCQEIIYQELLGARPKYGFYSGG 70
+ A + K + FG V PS D ++I + L S
Sbjct: 9 NIAKEIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYL--KSLNVNIVSEE 66
Query: 71 KAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYTAER 130
+ S ++DP++G NF IP F + ++ E + + +T Y A +
Sbjct: 67 LGVIDNSSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTYEFLTKSFYEAYK 126
Query: 131 GIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGVRSFGSEALDLA 190
G G++LN R+I+V N+I+ + ++ VR FG+ L++
Sbjct: 127 GKGAYLNGRKIKVKDFN--PNNIVISYYPSKKIDLEKLRNKVK----RVRIFGAFGLEMC 180
Query: 191 YIAAGRFDGFL--GKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKS------IISG 242
Y+A G D + +A+ +I EAG TD G + + + I++
Sbjct: 181 YVAKGTLDAVFDVRPKVRAVDIASSYIICKEAGALITDENGDELKFDLNATDRLNIIVAN 240
Query: 243 NMPIHEQLLAII 254
+ + + +L ++
Sbjct: 241 SKEMLDIILDLL 252
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima MSB8} PDB: 2p3v_A*
Length = 256
Score = 145 bits (365), Expect = 1e-35
Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 5/251 (1%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYG 65
L+ + K G L +G V +++ + G D V + + Q +I E+ P
Sbjct: 3 RLDFSIKLLRKVGHLLMIHWGRVDNVE-KKTGFKDIVTEIDREAQRMIVDEIRKFFPDEN 61
Query: 66 FYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDEL 125
+ + + + WI+DP++G NF + +P+F IS+A + E+ V+ P +E
Sbjct: 62 IMA--EEGIFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNET 119
Query: 126 YTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGVRSFGSE 185
AE G G+F N RIRVS S +T + R+ +R GS
Sbjct: 120 LYAEEGSGAFFNGERIRVSENA--SLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSA 177
Query: 186 ALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKSIISGNMP 245
AL+ AY+ AGR D F+ ++ W +AAGL+I+ EAGG TDF GK A +K+ I N
Sbjct: 178 ALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGL 237
Query: 246 IHEQLLAIIND 256
IH++++ ++N+
Sbjct: 238 IHDEVVKVVNE 248
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 133 bits (336), Expect = 3e-32
Identities = 47/290 (16%), Positives = 85/290 (29%), Gaps = 39/290 (13%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYG 65
L+ S A KAG + E V + +D K+ Q I L PK
Sbjct: 11 LVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLT 70
Query: 66 FYS---------------------------GGKAYVGQDSITRWIVDPLNGITNFFYAI- 97
+ ++ VDP++G + +
Sbjct: 71 IIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLL 130
Query: 98 PHFCISIALERDQEIIASVIFNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSII--- 154
+ + I + + + IA +I P + + +G + + L +
Sbjct: 131 DNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKH 190
Query: 155 CYATFKRNSRFLMQLCRIMDEAVGVRSFGSEALDLAYIAAGRFDG--FLGKGLSIWCVAA 212
T + +S L+ C V G + + G+ F G W A
Sbjct: 191 IITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCA 250
Query: 213 GLLIICEAGGFATDFLGK--NMGAETKSIISGN----MPIHEQLLAIIND 256
+I+ GG TD G E K + S + +E + + +
Sbjct: 251 PEVILHAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNYEYYASRVPE 300
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 130 bits (327), Expect = 3e-31
Identities = 60/261 (22%), Positives = 125/261 (47%), Gaps = 12/261 (4%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYG 65
++ V+ A +AG+ + ++ V + P+D V + K ++++ + P +
Sbjct: 8 CMDYAVTLAGQAGEVVREALKNEMNIMV-KSSPADLVTATDQKVEKMLITSIKEKYPSHS 66
Query: 66 FYSGGKAYVGQDSI----TRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPI 121
F G+ SI WI+DP++G TNF + P +SI ++++ ++++ +
Sbjct: 67 FIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCL 126
Query: 122 TDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQL------CRIMDE 175
D++YT +G G+F N ++++VS + ++ S++ + +++ +
Sbjct: 127 EDKMYTGRKGKGAFCNGQKLQVSHQEDITKSLLVTELGSSRTPETVRIILSNIERLLCLP 186
Query: 176 AVGVRSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAE 235
G+R G+ AL++ +AAG D + G+ W VA +I+ EAGG D G
Sbjct: 187 IHGIRGVGTAALNMCLVAAGAADAYYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPFDLM 246
Query: 236 TKSII-SGNMPIHEQLLAIIN 255
++ +I S N + E++ I
Sbjct: 247 SRRVIASSNKTLAERIAKEIQ 267
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 130 bits (328), Expect = 3e-31
Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 29/267 (10%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGA 60
M L + A + K ++ + V + ++ + L
Sbjct: 1 MDERDALRISREIAGEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAEDAALEIL--R 58
Query: 61 RPKYGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEI---IASVI 117
+ + + +G+ + +DPL+G N IP + +S+ ++ +
Sbjct: 59 KERVTVVTEESGVLGEGDVF-VALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGYV 117
Query: 118 FNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAV 177
+N T + Y A+ G++ N RI VS L + I Y +
Sbjct: 118 YNLATGDEYYADSS-GAYRNGERIEVSDAEELYCNAIIYYPDR------------KFPFK 164
Query: 178 GVRSFGSEALDLAYIAAGRFDGFL----GKGLSIWCVAAGLLIICEAGGFATDFLGKNMG 233
+R FGS A +L + A G FD FL GK L I+ AAG+ I +AGG T+ G+++G
Sbjct: 165 RMRIFGSAATELCFFADGSFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLG 224
Query: 234 A------ETKSIISGNMPIHEQLLAII 254
E +I++ N +H +LL +I
Sbjct: 225 NKKFDMQERLNIVAANEKLHPKLLELI 251
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis H37RV}
Length = 299
Score = 128 bits (322), Expect = 1e-30
Identities = 67/281 (23%), Positives = 116/281 (41%), Gaps = 27/281 (9%)
Query: 1 MSR-----SALLNVMVSAALKAGKFLSRDFGEVQDLQV---------SRKGPSDFVMKSH 46
M+R + L +V + A +A F+ EV + ++ P+D V
Sbjct: 1 MTRPDNEPARLRSVAENLAAEAAAFVRGRRAEVFGISRAGDGDGAVRAKSSPTDPVTVVD 60
Query: 47 SKCQEIIYQELLGARPKYGF-----YSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFC 101
+ + ++ L RP W++DP++G NF Y IP +
Sbjct: 61 TDTERLLRDRLAQLRPGDPILGEEGGGPADVTATPSDRVTWVLDPIDGTVNFVYGIPAYA 120
Query: 102 ISIALERDQEIIASVIFNPITDELYTAERGIGSFLNDRR----IRVSSRRILSNSII--- 154
+SI + +A + + +Y+A G+G+ L D R +R + LS +++
Sbjct: 121 VSIGAQVGGITVAGAVADVAARTVYSAATGLGAHLTDERGRHVLRCTGVDELSMALLGTG 180
Query: 155 CYATFKRNSRFLMQLCRIMDEAVGVRSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGL 214
+ + + L ++ VR GS ALDL +AAGR D + G+ +W AAG
Sbjct: 181 FGYSVRCREKQAELLAHVVPLVRDVRRIGSAALDLCMVAAGRLDAYYEHGVQVWDCAAGA 240
Query: 215 LIICEAGGFATDFLGKNMGAETKSIISGNMPIHEQLLAIIN 255
LI EAG + GA +++ I ++LLA +
Sbjct: 241 LIAAEAGARVLLSTPRAGGA-GLVVVAAAPGIADELLAALQ 280
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 123 bits (308), Expect = 5e-29
Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 11/257 (4%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYG 65
V AL+AG+ + + E + ++ +D V ++ +++I EL P +
Sbjct: 4 CFQAAVQLALRAGQIIRKALTE-EKRVSTKTSAADLVTETDHLVEDLIISELRERFPSHR 62
Query: 66 FYSGGKAYVGQDSITRW----IVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPI 121
F + A G + I+DP++G NF + P +SI QE+ VI++
Sbjct: 63 FIAEEAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCT 122
Query: 122 TDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCR------IMDE 175
+ LYT RG G+F N +R+RVS LS +++ + ++L + +
Sbjct: 123 EERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLHAK 182
Query: 176 AVGVRSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAE 235
A GVR GS L L ++A+G D + GL W +AA +II EAGG D G +
Sbjct: 183 AHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLM 242
Query: 236 TKSIISGNMPIHEQLLA 252
+++ + L+A
Sbjct: 243 ACRVVAASTREMAMLIA 259
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 112 bits (280), Expect = 9e-26
Identities = 49/253 (19%), Positives = 87/253 (34%), Gaps = 22/253 (8%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEV-QDLQVSRKGPSDFVMKSHSKCQEIIYQELLG 59
+ + + AALKAG+ + + + D ++ RK + + + K E I L
Sbjct: 18 LYFQSNAMAAIDAALKAGEKILSIYEDPKSDFEIERKADNSPLTIADRKAHEAIVAILNE 77
Query: 60 AR-PKYGFYSGGKAYVGQDSITR-WIVDPLNGITNFFYAIPHFCISIALERDQEIIASVI 117
P Y + WIVDPL+G F F ++IAL ++ + VI
Sbjct: 78 TPFPVLSEEGKHMDYAVRRGWDTLWIVDPLDGTKEFIKRNGEFTVNIALVQNAVPVMGVI 137
Query: 118 FNPITDELYTAERGIGSFLNDRRIRVSSRRI----------------LSNSIICYATFKR 161
+ P+ ELY A G G++ + + + + I A+
Sbjct: 138 YVPVKKELYFAVEGTGAYKCSGIVGLEDEGVTLQQMIEKSERMPLADARDHFIAVASRSH 197
Query: 162 NSRFLMQLCRIMDEAVGVRSF--GSEALDLAYIAAGRFDGFLGKG-LSIWCVAAGLLIIC 218
+ + + G ++ + +A G+ D + W AAG I
Sbjct: 198 LTPETETYIADLKKKHGNVELISSGSSIKICLVAEGKADVYPRFAPTMEWDTAAGHAIAR 257
Query: 219 EAGGFATDFLGKN 231
AG +
Sbjct: 258 AAGMEVYQAGKEE 270
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 108 bits (269), Expect = 2e-24
Identities = 26/295 (8%), Positives = 60/295 (20%), Gaps = 67/295 (22%)
Query: 27 EVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYSGGKAYVGQDSITRWIVDP 86
+ + V+ + E + + + I VDP
Sbjct: 95 RLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDP 154
Query: 87 LNGITNFFYAIPHFCISIALE----------------RDQEIIASVIFNPITDELYT--- 127
++ + + + + + VI P +
Sbjct: 155 IDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRR 214
Query: 128 -------AERGIGSFLNDRRIRVSSRRILSNSIIC------------YATFKRNSRFLMQ 168
+G+ ++ VS+R + + ++
Sbjct: 215 WKGQCYWGLSYLGTNIHSLLPPVSTRSNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIK 274
Query: 169 LCRIMDEAVGVRSFGSEALDLAYIAAGRFDGFL--GKGLSIWCVAAGLLIICEAGGFATD 226
+ + G D ++ W A I+ GG D
Sbjct: 275 GALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCAAHAILRAMGGGMVD 334
Query: 227 F--------------------------LGKNMGAETKSII-SGNMPIHEQLLAII 254
G + A +I + E L+ +
Sbjct: 335 LKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETFLSRL 389
Score = 40.0 bits (92), Expect = 6e-04
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 4 SALLNVMVSAALKAG----------KFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEII 53
S +L ++ + KA E ++ + ++K DF + QE+I
Sbjct: 2 SDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVI 61
Query: 54 YQELLGARPKYGF 66
+ + P G
Sbjct: 62 KENMENKFPGLGK 74
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Length = 357
Score = 105 bits (262), Expect = 1e-23
Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 39/220 (17%)
Query: 75 GQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDE---------- 124
G W +DP++G F F + +AL D + I P
Sbjct: 132 GGRKGRFWCLDPIDGTKGFLRG-EQFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKG 190
Query: 125 ------LYTAERGIGSFLND-------RRIRVSSRRILSNSIICYATFKRNSRFLMQLCR 171
++ A RG+G+F + +I V + + I K +S Q
Sbjct: 191 HESFGYIFRAVRGLGAFYSPSSDAESWTKIHVRHLKDTKDMITLEGVEKGHSSHDEQTAI 250
Query: 172 IMDEAVGVRSFGSEALDLAYIAAG------RFDGFLGKGLSIWCVAAGLLIICEAGGFAT 225
+ +A G R L IW AAG +I+ EAGG T
Sbjct: 251 KNKLNISKSLHLDSQAKYCLLALGLADVYLRLPIKLSYQEKIWDHAAGNVIVHEAGGIHT 310
Query: 226 DFLG-------KNMGAETKSIISGNMP--IHEQLLAIIND 256
D + TK +I+ + P +H+ +++ D
Sbjct: 311 DAMEDVPLDFGNGRTLATKGVIASSGPRELHDLVVSTSCD 350
Score = 43.5 bits (101), Expect = 5e-05
Identities = 40/213 (18%), Positives = 59/213 (27%), Gaps = 15/213 (7%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEV---QDLQVSRKGPSDFVMKSHSKCQEIIYQEL 57
M+ L V A KA R EV +D K + V Q II +
Sbjct: 1 MALERELLVATQAVRKASLLTKRIQSEVISHKDSTTITKNDNSPVTTGDYAAQTIIINAI 60
Query: 58 LGARPKYGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVI 117
P VG++S + ++GI N A + D
Sbjct: 61 KSNFPDDKV-------VGEESSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQF 113
Query: 118 FNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAV 177
+++ R + I F R +F + L I+D V
Sbjct: 114 PLKSLEDVRQIIDFGNYEGGR-----KGRFWCLDPIDGTKGFLRGEQFAVCLALIVDGVV 168
Query: 178 GVRSFGSEALDLAYIAAGRFDGFLGKGLSIWCV 210
+ G L L+ A G G V
Sbjct: 169 QLGCIGCPNLVLSSYGAQDLKGHESFGYIFRAV 201
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus
horikoshii} SCOP: e.7.1.1
Length = 254
Score = 100 bits (250), Expect = 3e-22
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 20/264 (7%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGP-SDFVMKSHSKCQEIIYQELLG 59
MS + + + FG + + P D + II +
Sbjct: 1 MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKD 60
Query: 60 ARPKYGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFN 119
S + Q S +VDPL+G NF IP F +S+A+ +++ I + I+
Sbjct: 61 LGV--NVVSEEIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYE 118
Query: 120 PITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGV 179
PI + LY G GS+LN +I+V + + +I+D+
Sbjct: 119 PIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTK---------GKGTKIIDKVKRT 169
Query: 180 RSFGSEALDLAYIAAGRFDGFL--GKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETK 237
R+ G+ AL+LAY+A G D + L +AAG++I EAG D GK++
Sbjct: 170 RTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFS 229
Query: 238 S------IISGNMPIHEQLLAIIN 255
+ I + N + E +L I
Sbjct: 230 ATEKVNIIAANNEELLETILRSIE 253
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory
for structural genomics hyperthermophIle, PSI; 2.80A
{Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 90.5 bits (223), Expect = 3e-19
Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 19/258 (7%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPS-DFVMKSHSKCQEIIYQELLGARPKY 64
V + + FG ++ + PS D +++I +
Sbjct: 14 WREVAIDIISDFETTIMPFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRI--TELGV 71
Query: 65 GFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDE 124
S + +S IVDPL+G NF IP F +S+A+ + + I ++I+ P+T+
Sbjct: 72 NVVSEEVGVIDNESEYTVIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAIIYEPMTER 131
Query: 125 LYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGVRSFGS 184
+ G G+FLN +RI+V SI Y + I+ R+ G+
Sbjct: 132 FFEGIPGEGAFLNGKRIKVRKTPDEKPSISFY--------SRGKGHEIVKHVKRTRTLGA 183
Query: 185 EALDLAYIAAGRFDGFL--GKGLSIWCVAAGLLIICEAGGFATDFLGKNM-----GAETK 237
AL+LAY+A G DG + K + +AAG +I EAG D GK++ +
Sbjct: 184 IALELAYLAMGALDGVVDVRKYVRPTDIAAGTIIAKEAGALIKDSAGKDIDISFNATDRL 243
Query: 238 SII-SGNMPIHEQLLAII 254
+I + + + +L+++
Sbjct: 244 DVIAVNSEELLKTILSLL 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.8 bits (90), Expect = 0.001
Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 102/260 (39%)
Query: 11 VSAALKA--GKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYS 68
++ L +L + ++ L +D + K +E+I
Sbjct: 84 LNLCLTEFENCYLEGN--DIHALAAKLLQEND---TTLVKTKELI--------------- 123
Query: 69 GGKAY-----VGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFN---P 120
K Y + + + L F A E + +++A IF
Sbjct: 124 --KNYITARIMAKRPFDKKSNSAL------FRA--------VGEGNAQLVA--IFGGQGN 165
Query: 121 ITD------ELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMD 174
D +LY + D I+ S+ L +L R
Sbjct: 166 TDDYFEELRDLYQTYH---VLVGDL-IKFSAET------------------LSELIRTTL 203
Query: 175 EAVGVRSFGSEALD-LAYI--AAGRFD-GFLGKGLS--IWCVAAGLL------IICEAGG 222
+A V + G L+ L ++ + D +L LS I C G++ + +
Sbjct: 204 DAEKVFTQG---LNILEWLENPSNTPDKDYL---LSIPISCPLIGVIQLAHYVVTAKL-- 255
Query: 223 FATDFLGKNMGAETKSIISG 242
LG G E +S + G
Sbjct: 256 -----LGFTPG-ELRSYLKG 269
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX,
flavoprotein, 3D-structure, oxidoreductase; HET: FAD;
2.80A {Streptomyces SP}
Length = 181
Score = 27.0 bits (59), Expect = 4.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 59 GARPKYGFYSGGKAYVGQDSITRWIVDPLNGI 90
G RP Y GG + D+ R++ P + +
Sbjct: 2 GVRPATNAY-GGGSTT--DNPNRFMYYPSHPV 30
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, alternative splicing, ATP-binding, cell
cycle, disease mutation; 3.00A {Homo sapiens} PDB:
3i6w_A
Length = 419
Score = 26.9 bits (59), Expect = 4.5
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 133 GSFLNDRRIRVSSRRILSNSIICYATFKRNSRFLMQLCRIMDEAVGVRSFGSEALDLAYI 192
G+F+N + RR L+N+ + RN F+ + D++V ++ E + +
Sbjct: 84 GTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTL 143
Query: 193 AAGRF 197
+G
Sbjct: 144 GSGAC 148
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 27.0 bits (58), Expect = 4.5
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 102 ISIALERDQEIIASVIFNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKR 161
+ +A ++A I + E+ + +R F +RR R + Y +
Sbjct: 316 VHLATY-SALLVARAINTCLAGEM-SEQRCFEEF--ERRYRREYGNFYQFLVAFYDMNQD 371
Query: 162 NSRFLMQLCRIMDEAVGVRSFGSEALDLAYIAAGRFDGFLG 202
+ +I++ + + AGR +
Sbjct: 372 TDSYFWSARKIIN------TEERANEAFVRLIAGRSNLDEP 406
>2zxl_A RED chlorophyll catabolite reductase, chloroplastic;
alpha-beta-alpha sandwich, chlorophyll catabolism,
coiled coil, NADP, oxidoreductase; 2.40A {Arabidopsis
thaliana} PDB: 2zxk_A
Length = 285
Score = 26.8 bits (59), Expect = 4.6
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 79 ITRWIVDPLNG-----ITNFF------YAIPHFCISIALERDQEIIASVIFNPITDEL 125
I WI + IT+ P+F + + + ++ + D +
Sbjct: 85 IGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLV 142
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.140 0.414
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,181,187
Number of extensions: 99953
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 23
Length of query: 256
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 166
Effective length of database: 3,511,270
Effective search space: 582870820
Effective search space used: 582870820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.8 bits)