HHsearch alignment for GI: 254780157 and conserved domain: pfam06506

>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=95.13  E-value=0.16  Score=31.39  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf             98099826545301038799998898765359829999726766851134652242036612577666750016998403
Q gi|254780157|r   28 DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQM  107 (165)
Q Consensus        28 ~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqM  107 (165)
T Consensus         4 ~~~~-~~~i~v~~~--~l~~av~~a~~~~~~g~dvIIsRGgta~~----ir~~~~iPVv~I~~s~--~Dil~al~~a~~~   74 (169)
T pfam06506         4 PEYA-DADVEVVDG--GLEDAVEVARALVAEGVDVIISRGGTAAY----LRDRLSVPVVEIKVSG--FDLLRALARARRY   74 (169)
T ss_pred             HHCC-CCEEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCHHHHH----HHHHCCCCEEEEECCH--HHHHHHHHHHHHH
T ss_conf             1157-772799977--78999999999997799599989658999----9985899889982788--6999999999975


Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHC--------CCHHHHHHHHHHHHH
Q ss_conf             56986204431675312289999999706--------999999999999999
Q gi|254780157|r  108 PAGVPVGTMAIGQSGAINASLLAVAILAL--------DDKELTDRLNEWRTQ  151 (165)
Q Consensus       108 P~Gvpvatv~vg~~~~~NAal~A~~Il~~--------~d~~i~~kl~~~r~~  151 (165)
T Consensus        75 ~~k--iav--vg~~~~~~~~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~~  122 (169)
T pfam06506        75 GGR--IGL--VGYENIIPGLKALSELLGLDIVQRAYQSEEEARAAVKELKAQ  122 (169)
T ss_pred             CCC--EEE--EECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf             897--999--927630368999999969935999966889999999999986