HHsearch alignment for GI: 254780157 and conserved domain: pfam06506
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=95.13 E-value=0.16 Score=31.39 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=72.4
Q ss_pred HHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHC
Q ss_conf 98099826545301038799998898765359829999726766851134652242036612577666750016998403
Q gi|254780157|r 28 DTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQM 107 (165)
Q Consensus 28 ~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t~~PVIgVP~~~~~~~G~dallS~vqM 107 (165)
T Consensus 4 ~~~~-~~~i~v~~~--~l~~av~~a~~~~~~g~dvIIsRGgta~~----ir~~~~iPVv~I~~s~--~Dil~al~~a~~~ 74 (169)
T pfam06506 4 PEYA-DADVEVVDG--GLEDAVEVARALVAEGVDVIISRGGTAAY----LRDRLSVPVVEIKVSG--FDLLRALARARRY 74 (169)
T ss_pred HHCC-CCEEEEEEC--CHHHHHHHHHHHHHCCCCEEEECCHHHHH----HHHHCCCCEEEEECCH--HHHHHHHHHHHHH
T ss_conf 1157-772799977--78999999999997799599989658999----9985899889982788--6999999999975
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHC--------CCHHHHHHHHHHHHH
Q ss_conf 56986204431675312289999999706--------999999999999999
Q gi|254780157|r 108 PAGVPVGTMAIGQSGAINASLLAVAILAL--------DDKELTDRLNEWRTQ 151 (165)
Q Consensus 108 P~Gvpvatv~vg~~~~~NAal~A~~Il~~--------~d~~i~~kl~~~r~~ 151 (165)
T Consensus 75 ~~k--iav--vg~~~~~~~~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~~ 122 (169)
T pfam06506 75 GGR--IGL--VGYENIIPGLKALSELLGLDIVQRAYQSEEEARAAVKELKAQ 122 (169)
T ss_pred CCC--EEE--EECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 897--999--927630368999999969935999966889999999999986