HHsearch alignment of GI: 254780157 and MMDB domain: 2q5c_A_1-78_169-196

>2q5c_A (A:1-78,A:169-196) NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=96.34  E-value=0.036  Score=35.09  Aligned_cols=81  Identities=12%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf             99887499995881698999999999998099826545301038799998898765359829999726766851134652
Q gi|254780157|r    1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM   80 (165)
Q Consensus         1 m~~~pkV~Ii~GS~SD~~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~   80 (165)
                      |+|+.|+++|.   .+....+.+.+++++++++.++.+.    +.+...+..+..+ .++++||+-.|-+    ..+..+
T Consensus         1 M~m~~kI~~IA---PY~~L~~~~~~i~~e~~l~I~V~~g----~l~egv~iAr~l~-~g~DVIISRGgTA----~lIr~~   68 (106)
T 2q5c_A            1 MSLSLKIALIS---QNENLLNLFPKLALEKNFIPITKTA----SLTRASKIAFGLQ-DEVDAIISRGATS----DYIKKS   68 (106)
T ss_dssp             -CCCCEEEEEE---SCHHHHHHHHHHHHHHTCEEEEEEC----CHHHHHHHHHHHT-TTCSEEEEEHHHH----HHHHTT
T ss_pred             CCCCEEEEEEC---CCHHHHHHHHHHHHHCCCEEEEEEE----EHHHHHHHHHHHH-CCCCEEEECCHHH----HHHHHH
T ss_conf             98740599987---8089999999998643846555433----2999999999875-5988999896489----999985


Q ss_pred             CCCCEEEECCCCC
Q ss_conf             2420366125776
Q gi|254780157|r   81 TSLPVLGVPIISQ   93 (165)
Q Consensus        81 t~~PVIgVP~~~~   93 (165)
                      ++.|||.+|+.-.
T Consensus        69 v~iPVVeI~i~~~   81 (106)
T 2q5c_A           69 VSIPSISIKVGEE   81 (106)
T ss_dssp             CSSCEEEECCCHH
T ss_pred             CCCCEEEEECCHH
T ss_conf             8998899707599