HHsearch results for GI: 254780157 and protein with PDBid: 2fn9_A
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=92.93 E-value=0.58 Score=26.27 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=64.2
Q ss_pred CCCEEEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH-
Q ss_conf 887499995881698---9999999999980998265453010387999988987653598299997267668511346-
Q gi|254780157|r 3 IAPPVAIIMGSQSDW---KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIA- 78 (165)
Q Consensus 3 ~~pkV~Ii~GS~SD~---~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva- 78 (165)
|+.+|+|++-+-++- .+.+.+.+.++++|+ ++.+...+..++...++++.+..++.+.+|....-...+...+.
T Consensus 1 ~~g~Igvvvp~~~~~f~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~l~~ 78 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGY--EATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKR 78 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf 989899992889899999999999999998699--899996999989999999999974998553013332110899999
Q ss_pred -HHCCCCEEEE
Q ss_conf -5224203661
Q gi|254780157|r 79 -AMTSLPVLGV 88 (165)
Q Consensus 79 -~~t~~PVIgV 88 (165)
.....||+.+
T Consensus 79 ~~~~gipvV~~ 89 (290)
T 2fn9_A 79 AKEAGIPVFCV 89 (290)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCEEEEE
T ss_conf 98569839996