RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole
carboxylase catalytic subunit protein [Candidatus Liberibacter
asiaticus str. psy62]
         (165 letters)



>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
           biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
           (A:)
          Length = 170

 Score =  191 bits (488), Expect = 3e-50
 Identities = 88/162 (54%), Positives = 115/162 (70%)

Query: 2   NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61
           ++   V +IMGS SDW+ MKYA D+LD L I YE +++SAHRTPD + E+A+ AR  G K
Sbjct: 9   HMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLK 68

Query: 62  LIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQS 121
           +IIAGAGGAAHLPGM+AA T+LPV+GVP+ S+ L G+DSLLSIVQMP GVPV T+AIG++
Sbjct: 69  VIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKA 128

Query: 122 GAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
           G+ NA LLA  IL     ++ D L   R      + E  + +
Sbjct: 129 GSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 170


>1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural
           genomics, JCSG, PSI, protein structure initiative; 1.77A
           {Thermotoga maritima} (A:)
          Length = 183

 Score =  185 bits (472), Expect = 2e-48
 Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 2/159 (1%)

Query: 5   PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
           P V IIMGS SD  +MK AA++L+  GIDYE  I+SAHRTPDR+ E+AKNA   G ++II
Sbjct: 14  PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73

Query: 65  AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
           AGAGGAAHLPGM+A++T LPV+GVP+ + TL G+DSL SIVQMP GVPV T+AI    A 
Sbjct: 74  AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAK 131

Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
           NA +LA +IL +   E+  ++ E++ +    + E  + +
Sbjct: 132 NAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRL 170


>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase);
           acidophIle, protein stability, lyase; HET: CIT; 1.55A
           {Acetobacter aceti} (A:)
          Length = 182

 Score =  185 bits (471), Expect = 3e-48
 Identities = 98/163 (60%), Positives = 116/163 (71%)

Query: 1   MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60
              AP V IIMGSQSDW+ M++A  +L  L I +E  I+SAHRTPDRL ++A+ A   G 
Sbjct: 18  AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77

Query: 61  KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120
            +IIAGAGGAAHLPGM AA T LPVLGVP+ S+ L G+DSLLSIVQMP GVPVGT+AIG 
Sbjct: 78  NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 137

Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
           SGA NA+LLA +ILAL +  L  RL  WR  QT S+   P   
Sbjct: 138 SGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPITE 180


>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit
           PURE; 3-layer (ABA) sandwich, rossmann fold, csgid,
           lyase, structural genomics; 1.41A {Yersinia pestis} PDB:
           1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* (A:)
          Length = 174

 Score =  181 bits (461), Expect = 4e-47
 Identities = 87/163 (53%), Positives = 110/163 (67%)

Query: 1   MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60
                 +AI+ GS+SDW   ++AAD+L TL + +   ++SAHRTPDRL  FA+ A   G 
Sbjct: 9   YAAGVKIAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGL 68

Query: 61  KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120
            +IIAG GGAAHLPG +AA T +PVLGVP+ S  L G+DSL SIVQ P G+PVGT+AIG+
Sbjct: 69  HVIIAGNGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIPVGTLAIGK 128

Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
           +GA NA+LLA  ILAL D EL  RL  WR  QT  + + P   
Sbjct: 129 AGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPDPR 171


>2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit;
           rossmann fold, structural genomics, NPPSFA; 2.31A
           {Methanocaldococcus jannaschii} (A:)
          Length = 157

 Score =  167 bits (424), Expect = 7e-43
 Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 6/157 (3%)

Query: 7   VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66
           + IIMGS+SD KI + A ++L   G+++E R+ SAHRTP+ + E  KN++ + F   IA 
Sbjct: 2   ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVF---IAI 58

Query: 67  AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINA 126
           AG AAHLPG++A++T+ PV+ VP +   L G+D+LLS VQMP G+PV T+ I      NA
Sbjct: 59  AGLAAHLPGVVASLTTKPVIAVP-VDAKLDGLDALLSSVQMPPGIPVATVGID--RGENA 115

Query: 127 SLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
           ++LA+ ILAL D+ +  +L E+R +    +    + +
Sbjct: 116 AILALEILALKDENIAKKLIEYREKMKKKVYASDEKV 152


>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase,
           lyase; 2.80A {Homo sapiens} (A:261-394)
          Length = 134

 Score =  144 bits (366), Expect = 5e-36
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 5   PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEG-FKLI 63
             V ++ GS SD    +         GI  E R+ SAH+ PD  +        +G   + 
Sbjct: 6   CRVVVLXGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVF 65

Query: 64  IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123
           +A AG +  L  + +  T+ PV+  P ++    G+  + S +++P+G+   T+   +   
Sbjct: 66  VAVAGRSNGLGPVXSGNTAYPVISCPPLTP-DWGVQDVWSSLRLPSGLGCSTVLSPE--- 121

Query: 124 INASLLAVAILAL 136
             ++  A  I  L
Sbjct: 122 -GSAQFAAQIFGL 133


>1ujn_A Dehydroquinate synthase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, lyase; 1.80A {Thermus thermophilus HB8}
           (A:1-160)
          Length = 160

 Score = 30.1 bits (67), Expect = 0.18
 Identities = 13/138 (9%), Positives = 38/138 (27%), Gaps = 9/138 (6%)

Query: 7   VAIIMGSQSDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIA 65
            A++   + +    + A  +     +         +     +++ +           ++ 
Sbjct: 31  AALLFDRRVEGFAQEVAKALGVRHLLGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLV 90

Query: 66  GAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAIN 125
             GG      +   + +  + GV  ++       + L+IV    G   G         + 
Sbjct: 91  VGGGTLT--DLGGFVAATYLRGVAYLA----FPTTTLAIVDASVGGKTGINLPEGKNLVG 144

Query: 126 ASLLAVAILALDDKELTD 143
           A      + A  +     
Sbjct: 145 AFHFPQGVYA--ELRALK 160


>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase;
          oxidoreductase, structural genomics, center for
          structural genomics of infectious diseases, csgid; HET:
          FAD; 2.20A {Vibrio cholerae} (A:1-82,A:334-357)
          Length = 106

 Score = 27.8 bits (62), Expect = 0.79
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 27 LDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68
            T GI+  A  +    + D L     +A +     +I G G
Sbjct: 22 YHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKG 63


>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine
          reductase; peptidoglycan synthesis, cell WALL, cell
          division, oxidoreductase, NADP; HET: FAD EPU; 1.80A
          {Escherichia coli} (A:1-66,A:320-340)
          Length = 87

 Score = 27.0 bits (60), Expect = 1.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 27 LDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69
           +T GID+ A+ I       +L+   + A  EG  ++I G G 
Sbjct: 6  WNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGS 48


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 26.3 bits (57), Expect = 2.2
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 3   IAPPVAIIM----GSQSDWKIMKY----AADMLDTLGIDYEARIISAHRTPDR 47
           I  P  ++            I  +    A +MLD  G+  ++  I      + 
Sbjct: 240 IGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 292


>3k0b_A Predicted N6-adenine-specific DNA methylase;
          methylase,PF01170, putative RNA methylase, PSI,MCSG,
          structural genomics; 1.50A {Listeria monocytogenes str}
          (A:178-393)
          Length = 216

 Score = 26.1 bits (56), Expect = 2.5
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 3  IAPPVAIIMGSQSDWKIMKYAAD-MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61
          I    A  +   + W   +   D +  +  I  EA +I  +  P    EF         K
Sbjct: 8  IKETXAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWXPK 67

Query: 62 LIIAGAGGAA 71
           + A A   A
Sbjct: 68 QVWADARQEA 77


>2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural
          genomics, isomerase, PSI-2, protein structure
          initiative; HET: MSE; 1.72A {Roseovarius SP}
          (A:125-356)
          Length = 232

 Score = 26.2 bits (57), Expect = 2.6
 Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 44 TPDRLIEFAKNARFEGF---KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGID 99
           PD     A   + EG+   ++ +        +  +     ++   G+ + +    G  
Sbjct: 19 EPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWT 77


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.1 bits (55), Expect = 5.3
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 5/20 (25%)

Query: 98  IDSLLSIV-----QMPAGVP 112
           I+SL+ +V      M   VP
Sbjct: 8   IESLVEVVFYRGMTMQVAVP 27


>3bul_A Methionine synthase; transferase, reactivation conformation,
           cobalamin, intermodular interactions, amino-acid
           biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli}
           (A:95-251)
          Length = 157

 Score = 24.6 bits (53), Expect = 7.2
 Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 11/136 (8%)

Query: 21  KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80
                +L      YE   +      ++++  AK        LI         L  M+   
Sbjct: 22  NIVGVVLQCNN--YEIVDLGVMVPAEKILRTAKE---VNADLIGLSGLITPSLDEMVNVA 76

Query: 81  TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDK- 139
             +   G  I     G   S             G        A     +  A+L+   + 
Sbjct: 77  KEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYV-QNASRTVGVVAALLSDTQRD 135

Query: 140 ----ELTDRLNEWRTQ 151
                        R Q
Sbjct: 136 DFVARTRKEYETVRIQ 151


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,201,488
Number of extensions: 51015
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 27
Length of query: 165
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 83
Effective length of database: 2,184,039
Effective search space: 181275237
Effective search space used: 181275237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)