RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein [Candidatus Liberibacter asiaticus str. psy62] (165 letters) >1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} (A:) Length = 170 Score = 191 bits (488), Expect = 3e-50 Identities = 88/162 (54%), Positives = 115/162 (70%) Query: 2 NIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 ++ V +IMGS SDW+ MKYA D+LD L I YE +++SAHRTPD + E+A+ AR G K Sbjct: 9 HMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLK 68 Query: 62 LIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQS 121 +IIAGAGGAAHLPGM+AA T+LPV+GVP+ S+ L G+DSLLSIVQMP GVPV T+AIG++ Sbjct: 69 VIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKA 128 Query: 122 GAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 G+ NA LLA IL ++ D L R + E + + Sbjct: 129 GSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 170 >1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} (A:) Length = 183 Score = 185 bits (472), Expect = 2e-48 Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 2/159 (1%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 P V IIMGS SD +MK AA++L+ GIDYE I+SAHRTPDR+ E+AKNA G ++II Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+A++T LPV+GVP+ + TL G+DSL SIVQMP GVPV T+AI A Sbjct: 74 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAK 131 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 NA +LA +IL + E+ ++ E++ + + E + + Sbjct: 132 NAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRL 170 >1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} (A:) Length = 182 Score = 185 bits (471), Expect = 3e-48 Identities = 98/163 (60%), Positives = 116/163 (71%) Query: 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60 AP V IIMGSQSDW+ M++A +L L I +E I+SAHRTPDRL ++A+ A G Sbjct: 18 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77 Query: 61 KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120 +IIAGAGGAAHLPGM AA T LPVLGVP+ S+ L G+DSLLSIVQMP GVPVGT+AIG Sbjct: 78 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 137 Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 SGA NA+LLA +ILAL + L RL WR QT S+ P Sbjct: 138 SGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPITE 180 >3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* (A:) Length = 174 Score = 181 bits (461), Expect = 4e-47 Identities = 87/163 (53%), Positives = 110/163 (67%) Query: 1 MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60 +AI+ GS+SDW ++AAD+L TL + + ++SAHRTPDRL FA+ A G Sbjct: 9 YAAGVKIAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGL 68 Query: 61 KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120 +IIAG GGAAHLPG +AA T +PVLGVP+ S L G+DSL SIVQ P G+PVGT+AIG+ Sbjct: 69 HVIIAGNGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSIVQXPRGIPVGTLAIGK 128 Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 +GA NA+LLA ILAL D EL RL WR QT + + P Sbjct: 129 AGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDNPDPR 171 >2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} (A:) Length = 157 Score = 167 bits (424), Expect = 7e-43 Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 6/157 (3%) Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAG 66 + IIMGS+SD KI + A ++L G+++E R+ SAHRTP+ + E KN++ + F IA Sbjct: 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVF---IAI 58 Query: 67 AGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINA 126 AG AAHLPG++A++T+ PV+ VP + L G+D+LLS VQMP G+PV T+ I NA Sbjct: 59 AGLAAHLPGVVASLTTKPVIAVP-VDAKLDGLDALLSSVQMPPGIPVATVGID--RGENA 115 Query: 127 SLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 ++LA+ ILAL D+ + +L E+R + + + + Sbjct: 116 AILALEILALKDENIAKKLIEYREKMKKKVYASDEKV 152 >2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} (A:261-394) Length = 134 Score = 144 bits (366), Expect = 5e-36 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEG-FKLI 63 V ++ GS SD + GI E R+ SAH+ PD + +G + Sbjct: 6 CRVVVLXGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVF 65 Query: 64 IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123 +A AG + L + + T+ PV+ P ++ G+ + S +++P+G+ T+ + Sbjct: 66 VAVAGRSNGLGPVXSGNTAYPVISCPPLTP-DWGVQDVWSSLRLPSGLGCSTVLSPE--- 121 Query: 124 INASLLAVAILAL 136 ++ A I L Sbjct: 122 -GSAQFAAQIFGL 133 >1ujn_A Dehydroquinate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} (A:1-160) Length = 160 Score = 30.1 bits (67), Expect = 0.18 Identities = 13/138 (9%), Positives = 38/138 (27%), Gaps = 9/138 (6%) Query: 7 VAIIMGSQSDWKIMKYAADMLDTLGIDYEARI-ISAHRTPDRLIEFAKNARFEGFKLIIA 65 A++ + + + A + + + +++ + ++ Sbjct: 31 AALLFDRRVEGFAQEVAKALGVRHLLGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLV 90 Query: 66 GAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAIN 125 GG + + + + GV ++ + L+IV G G + Sbjct: 91 VGGGTLT--DLGGFVAATYLRGVAYLA----FPTTTLAIVDASVGGKTGINLPEGKNLVG 144 Query: 126 ASLLAVAILALDDKELTD 143 A + A + Sbjct: 145 AFHFPQGVYA--ELRALK 160 >3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; oxidoreductase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} (A:1-82,A:334-357) Length = 106 Score = 27.8 bits (62), Expect = 0.79 Identities = 10/42 (23%), Positives = 16/42 (38%) Query: 27 LDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 T GI+ A + + D L +A + +I G G Sbjct: 22 YHTFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKG 63 >1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} (A:1-66,A:320-340) Length = 87 Score = 27.0 bits (60), Expect = 1.3 Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 27 LDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69 +T GID+ A+ I +L+ + A EG ++I G G Sbjct: 6 WNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGS 48 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 26.3 bits (57), Expect = 2.2 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 8/53 (15%) Query: 3 IAPPVAIIM----GSQSDWKIMKY----AADMLDTLGIDYEARIISAHRTPDR 47 I P ++ I + A +MLD G+ ++ I + Sbjct: 240 IGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 292 >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str} (A:178-393) Length = 216 Score = 26.1 bits (56), Expect = 2.5 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 3 IAPPVAIIMGSQSDWKIMKYAAD-MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFK 61 I A + + W + D + + I EA +I + P EF K Sbjct: 8 IKETXAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWXPK 67 Query: 62 LIIAGAGGAA 71 + A A A Sbjct: 68 QVWADARQEA 77 >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2, protein structure initiative; HET: MSE; 1.72A {Roseovarius SP} (A:125-356) Length = 232 Score = 26.2 bits (57), Expect = 2.6 Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 3/59 (5%) Query: 44 TPDRLIEFAKNARFEGF---KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGID 99 PD A + EG+ ++ + + + ++ G+ + + G Sbjct: 19 EPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWT 77 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.1 bits (55), Expect = 5.3 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 5/20 (25%) Query: 98 IDSLLSIV-----QMPAGVP 112 I+SL+ +V M VP Sbjct: 8 IESLVEVVFYRGMTMQVAVP 27 >3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} (A:95-251) Length = 157 Score = 24.6 bits (53), Expect = 7.2 Identities = 19/136 (13%), Positives = 31/136 (22%), Gaps = 11/136 (8%) Query: 21 KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM 80 +L YE + ++++ AK LI L M+ Sbjct: 22 NIVGVVLQCNN--YEIVDLGVMVPAEKILRTAKE---VNADLIGLSGLITPSLDEMVNVA 76 Query: 81 TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILALDDK- 139 + G I G S G A + A+L+ + Sbjct: 77 KEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYV-QNASRTVGVVAALLSDTQRD 135 Query: 140 ----ELTDRLNEWRTQ 151 R Q Sbjct: 136 DFVARTRKEYETVRIQ 151 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,201,488 Number of extensions: 51015 Number of successful extensions: 244 Number of sequences better than 10.0: 1 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 27 Length of query: 165 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 83 Effective length of database: 2,184,039 Effective search space: 181275237 Effective search space used: 181275237 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.6 bits)