RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein [Candidatus Liberibacter asiaticus str. psy62] (165 letters) >d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Length = 169 Score = 172 bits (438), Expect = 1e-44 Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 2/159 (1%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 P V IIMGS SD +MK AA++L+ GIDYE I+SAHRTPDR+ E+AKNA G ++II Sbjct: 1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+A++T LPV+GVP+ + TL G+DSL SIVQMP GVPV T+AI A Sbjct: 61 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAK 118 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163 NA +LA +IL + E+ ++ E++ + + E + + Sbjct: 119 NAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRL 157 >d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Length = 155 Score = 168 bits (427), Expect = 2e-43 Identities = 88/154 (57%), Positives = 111/154 (72%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 V +IMGS SDW+ MKYA D+LD L I YE +++SAHRTPD + E+A+ AR G K+II Sbjct: 2 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGM+AA T+LPV+GVP+ S+ L G+DSLLSIVQMP GVPV T+AIG++G+ Sbjct: 62 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 121 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISE 158 NA LLA IL ++ D L R + E Sbjct: 122 NAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 155 >d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Length = 159 Score = 166 bits (422), Expect = 9e-43 Identities = 98/157 (62%), Positives = 116/157 (73%) Query: 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63 AP V IIMGSQSDW+ M++A +L L I +E I+SAHRTPDRL ++A+ A G +I Sbjct: 2 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61 Query: 64 IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123 IAGAGGAAHLPGM AA T LPVLGVP+ S+ L G+DSLLSIVQMP GVPVGT+AIG SGA Sbjct: 62 IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 121 Query: 124 INASLLAVAILALDDKELTDRLNEWRTQQTISISEYP 160 NA+LLA +ILAL + L RL WR QT S+ P Sbjct: 122 KNAALLAASILALYNPALAARLETWRALQTASVPNSP 158 >d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Length = 163 Score = 166 bits (421), Expect = 1e-42 Identities = 92/156 (58%), Positives = 119/156 (76%) Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64 VAI+MGS+SDW M++AA++ + L + + ++SAHRTPD+L FA++A G+++II Sbjct: 2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61 Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124 AGAGGAAHLPGMIAA T +PVLGVP+ S L G+DSL SIVQMP G+PVGT+AIG++GA Sbjct: 62 AGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 121 Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYP 160 NA+LLA ILA DKEL RLN+WR QT + E P Sbjct: 122 NAALLAAQILATHDKELHQRLNDWRKAQTDEVLENP 157 >d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 198 Score = 30.2 bits (67), Expect = 0.098 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69 T GID+ A+ I +L+ + A EG ++I G G Sbjct: 8 TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGS 48 >d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Length = 106 Score = 28.0 bits (62), Expect = 0.47 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 14 QSDWKIMKYAADMLDTLGIDYEARI----ISAHRTPDRLIEFAKNARFEGF 60 Q+ WK A + D + ID+ + + D ++ + GF Sbjct: 5 QATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGF 55 >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 278 Score = 25.8 bits (55), Expect = 1.8 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%) Query: 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63 K+ YA+ + G + TP+ E A+ A +G+ I Sbjct: 5 KLRTYASQLQFGWGDKNHILV-----TPEEYAEAARAALDDGYDAI 45 >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 Score = 25.6 bits (55), Expect = 2.4 Identities = 7/22 (31%), Positives = 13/22 (59%) Query: 42 HRTPDRLIEFAKNARFEGFKLI 63 + ++L+ AK A +GF+ I Sbjct: 13 GYSDEKLVRLAKEAVADGFRTI 34 >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 Score = 24.9 bits (53), Expect = 3.3 Identities = 3/25 (12%), Positives = 11/25 (44%) Query: 39 ISAHRTPDRLIEFAKNARFEGFKLI 63 I + + L++ +G++ + Sbjct: 11 IGLQQNVETLLQLVNQYVDQGYERV 35 >d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 300 Score = 24.9 bits (53), Expect = 4.0 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 26 MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMTSLP 84 +L +++E I+ P + + R E +L I+G GG+ + +I + Sbjct: 3 LLQDY-LNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTW 61 Query: 85 VLGVPIIS 92 V +I+ Sbjct: 62 NWEVEVIA 69 >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 Score = 24.6 bits (52), Expect = 4.4 Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 10/35 (28%) Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63 T+ ++ +P+ + A+N +GF+ + Sbjct: 10 TVSVN----------SPEEMAADAENYLKQGFQTL 34 >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 Score = 24.6 bits (52), Expect = 4.5 Identities = 2/25 (8%), Positives = 9/25 (36%) Query: 39 ISAHRTPDRLIEFAKNARFEGFKLI 63 + ++ + +G++ I Sbjct: 11 LGIQADEQATVDLVRRHVEQGYRRI 35 >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 Score = 24.7 bits (52), Expect = 4.9 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%) Query: 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63 K++ Y + D ++ TP+ FA+ G+K I Sbjct: 4 KVLAYG----SIMCGDELEGGLA---TPEDYGRFAETLVKRGYKGI 42 >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Score = 24.6 bits (52), Expect = 5.1 Identities = 7/32 (21%), Positives = 15/32 (46%) Query: 37 RIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68 R++ H ++L+ K G ++ +A G Sbjct: 395 RVVLVHGEEEKLLALGKLLALRGQEVSLARFG 426 >d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis [TaxId: 1423]} Length = 328 Score = 24.0 bits (52), Expect = 6.0 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 8/64 (12%) Query: 87 GVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIG-QSGAINA---SLLAVAILALDDKELT 142 GVP S GGI +L+ IG AI+ SL +L K + Sbjct: 265 GVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLL----KHMA 320 Query: 143 DRLN 146 Sbjct: 321 QEWE 324 >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 Score = 23.8 bits (50), Expect = 8.2 Identities = 5/25 (20%), Positives = 10/25 (40%) Query: 39 ISAHRTPDRLIEFAKNARFEGFKLI 63 + T +L++ EG+ I Sbjct: 11 VGIMDTIPQLLDVVGGYLDEGYVRI 35 >d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 Score = 23.6 bits (50), Expect = 9.8 Identities = 7/22 (31%), Positives = 11/22 (50%) Query: 11 MGSQSDWKIMKYAADMLDTLGI 32 +G +D + ADM LG+ Sbjct: 121 LGFAADERDFTLCADMFKLLGV 142 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 591,808 Number of extensions: 25859 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 27 Length of query: 165 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 86 Effective length of database: 1,322,926 Effective search space: 113771636 Effective search space used: 113771636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.2 bits)