RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole
carboxylase catalytic subunit protein [Candidatus Liberibacter
asiaticus str. psy62]
(165 letters)
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 172 bits (438), Expect = 1e-44
Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
P V IIMGS SD +MK AA++L+ GIDYE I+SAHRTPDR+ E+AKNA G ++II
Sbjct: 1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGM+A++T LPV+GVP+ + TL G+DSL SIVQMP GVPV T+AI A
Sbjct: 61 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAK 118
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDI 163
NA +LA +IL + E+ ++ E++ + + E + +
Sbjct: 119 NAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRL 157
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 168 bits (427), Expect = 2e-43
Identities = 88/154 (57%), Positives = 111/154 (72%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
V +IMGS SDW+ MKYA D+LD L I YE +++SAHRTPD + E+A+ AR G K+II
Sbjct: 2 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGM+AA T+LPV+GVP+ S+ L G+DSLLSIVQMP GVPV T+AIG++G+
Sbjct: 62 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 121
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISE 158
NA LLA IL ++ D L R + E
Sbjct: 122 NAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 155
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Length = 159
Score = 166 bits (422), Expect = 9e-43
Identities = 98/157 (62%), Positives = 116/157 (73%)
Query: 4 APPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63
AP V IIMGSQSDW+ M++A +L L I +E I+SAHRTPDRL ++A+ A G +I
Sbjct: 2 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61
Query: 64 IAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGA 123
IAGAGGAAHLPGM AA T LPVLGVP+ S+ L G+DSLLSIVQMP GVPVGT+AIG SGA
Sbjct: 62 IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 121
Query: 124 INASLLAVAILALDDKELTDRLNEWRTQQTISISEYP 160
NA+LLA +ILAL + L RL WR QT S+ P
Sbjct: 122 KNAALLAASILALYNPALAARLETWRALQTASVPNSP 158
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 166 bits (421), Expect = 1e-42
Identities = 92/156 (58%), Positives = 119/156 (76%)
Query: 5 PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
VAI+MGS+SDW M++AA++ + L + + ++SAHRTPD+L FA++A G+++II
Sbjct: 2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61
Query: 65 AGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAI 124
AGAGGAAHLPGMIAA T +PVLGVP+ S L G+DSL SIVQMP G+PVGT+AIG++GA
Sbjct: 62 AGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 121
Query: 125 NASLLAVAILALDDKELTDRLNEWRTQQTISISEYP 160
NA+LLA ILA DKEL RLN+WR QT + E P
Sbjct: 122 NAALLAAQILATHDKELHQRLNDWRKAQTDEVLENP 157
>d1uxya1 d.145.1.2 (A:3-200) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 198
Score = 30.2 bits (67), Expect = 0.098
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGG 69
T GID+ A+ I +L+ + A EG ++I G G
Sbjct: 8 TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGS 48
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 28.0 bits (62), Expect = 0.47
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 14 QSDWKIMKYAADMLDTLGIDYEARI----ISAHRTPDRLIEFAKNARFEGF 60
Q+ WK A + D + ID+ + + D ++ + GF
Sbjct: 5 QATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGF 55
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273
{Salmonella typhimurium [TaxId: 90371]}
Length = 278
Score = 25.8 bits (55), Expect = 1.8
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63
K+ YA+ + G + TP+ E A+ A +G+ I
Sbjct: 5 KLRTYASQLQFGWGDKNHILV-----TPEEYAEAARAALDDGYDAI 45
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas
campestris pv. campestris [TaxId: 340]}
Length = 252
Score = 25.6 bits (55), Expect = 2.4
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 42 HRTPDRLIEFAKNARFEGFKLI 63
+ ++L+ AK A +GF+ I
Sbjct: 13 GYSDEKLVRLAKEAVADGFRTI 34
>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase
{Listeria innocua [TaxId: 1642]}
Length = 244
Score = 24.9 bits (53), Expect = 3.3
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 39 ISAHRTPDRLIEFAKNARFEGFKLI 63
I + + L++ +G++ +
Sbjct: 11 IGLQQNVETLLQLVNQYVDQGYERV 35
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 24.9 bits (53), Expect = 4.0
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 26 MLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF-KLIIAGAGGAAHLPGMIAAMTSLP 84
+L +++E I+ P + + R E +L I+G GG+ + +I +
Sbjct: 3 LLQDY-LNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTW 61
Query: 85 VLGVPIIS 92
V +I+
Sbjct: 62 NWEVEVIA 69
>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus
subtilis [TaxId: 1423]}
Length = 234
Score = 24.6 bits (52), Expect = 4.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 29 TLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63
T+ ++ +P+ + A+N +GF+ +
Sbjct: 10 TVSVN----------SPEEMAADAENYLKQGFQTL 34
>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase
{Deinococcus radiodurans [TaxId: 1299]}
Length = 243
Score = 24.6 bits (52), Expect = 4.5
Identities = 2/25 (8%), Positives = 9/25 (36%)
Query: 39 ISAHRTPDRLIEFAKNARFEGFKLI 63
+ ++ + +G++ I
Sbjct: 11 LGIQADEQATVDLVRRHVEQGYRRI 35
>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 255
Score = 24.7 bits (52), Expect = 4.9
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 18 KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLI 63
K++ Y + D ++ TP+ FA+ G+K I
Sbjct: 4 KVLAYG----SIMCGDELEGGLA---TPEDYGRFAETLVKRGYKGI 42
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 24.6 bits (52), Expect = 5.1
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 37 RIISAHRTPDRLIEFAKNARFEGFKLIIAGAG 68
R++ H ++L+ K G ++ +A G
Sbjct: 395 RVVLVHGEEEKLLALGKLLALRGQEVSLARFG 426
>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 328
Score = 24.0 bits (52), Expect = 6.0
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 87 GVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIG-QSGAINA---SLLAVAILALDDKELT 142
GVP S GGI +L+ IG AI+ SL +L K +
Sbjct: 265 GVPAKSGVSGGIMALVPPSARREQPFQSGCGIGIYGPAIDEYGNSLTGGMLL----KHMA 320
Query: 143 DRLN 146
Sbjct: 321 QEWE 324
>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase
{Amycolatopsis sp. [TaxId: 37632]}
Length = 242
Score = 23.8 bits (50), Expect = 8.2
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 39 ISAHRTPDRLIEFAKNARFEGFKLI 63
+ T +L++ EG+ I
Sbjct: 11 VGIMDTIPQLLDVVGGYLDEGYVRI 35
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA
{Escherichia coli [TaxId: 562]}
Length = 174
Score = 23.6 bits (50), Expect = 9.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 11 MGSQSDWKIMKYAADMLDTLGI 32
+G +D + ADM LG+
Sbjct: 121 LGFAADERDFTLCADMFKLLGV 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 591,808
Number of extensions: 25859
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 27
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)