BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole
carboxylase catalytic subunit protein [Candidatus Liberibacter
asiaticus str. psy62]
         (165 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 165

 Score =  330 bits (845), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60
           MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF
Sbjct: 1   MNIAPPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGF 60

Query: 61  KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120
           KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ
Sbjct: 61  KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQ 120

Query: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDIPA 165
           SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDIPA
Sbjct: 121 SGAINASLLAVAILALDDKELTDRLNEWRTQQTISISEYPKDIPA 165


>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 419

 Score = 28.5 bits (62), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 61  KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPV-GTMAIG 119
            ++I GAGG AH+     A  +  +  + I S+TL     ++  +     + + G +AI 
Sbjct: 4   NVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIH 63

Query: 120 QSGAIN 125
           Q  A+N
Sbjct: 64  QVDALN 69


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 27.7 bits (60), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 82  SLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVA 132
           SLP+L +  IS T+GGID LL  V +          +G +G+  ++LL +A
Sbjct: 2   SLPILRLDHISATIGGID-LLQDVCLSIKPKERICLVGCNGSGKSTLLKIA 51


>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 529

 Score = 26.9 bits (58), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 2   NIAPPVAIIMGSQSDWKIMKYAADM 26
           N + P+   +G ++DW +  YAAD+
Sbjct: 238 NSSIPIISAIGHETDWTLADYAADL 262


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score = 24.3 bits (51), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 91  ISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAV 131
           + +T+ G   +  +  MP  +  GT   G+S AIN  ++++
Sbjct: 396 LGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSL 436


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 429

 Score = 23.1 bits (48), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 5  PPVAIIMGSQSDWKIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLII 64
          PPV  I G+     +  ++  +L+T G+      +  H +P  LI +      E F+L +
Sbjct: 24 PPVIHIGGTNGKGSVASFSQRLLETSGLS-----VHVHTSP-HLIRWN-----ERFRLGV 72

Query: 65 AGAGG 69
           G  G
Sbjct: 73 KGGRG 77


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 22.3 bits (46), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 125 NASLLAVAILALDDKELTDRLN 146
           +A L+ +  +  DD ELT RLN
Sbjct: 191 DAILVGIGTVLADDPELTCRLN 212


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,568
Number of Sequences: 1233
Number of extensions: 3427
Number of successful extensions: 13
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 165
length of database: 328,796
effective HSP length: 68
effective length of query: 97
effective length of database: 244,952
effective search space: 23760344
effective search space used: 23760344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 35 (18.1 bits)