HHsearch alignment for GI: 254780158 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.86 E-value=7.7e-20 Score=153.47 Aligned_cols=257 Identities=13% Similarity=0.129 Sum_probs=182.7
Q ss_pred CCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECCC
Q ss_conf 87899980989---------899999999887978999967677713422682798789999999999741999998772
Q gi|254780158|r 3 KKTIGIIGGGQ---------LARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFADICDYATYESE 73 (354)
Q Consensus 3 ~k~IgIlG~Gq---------L~rml~~aA~~lG~~v~v~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~~~~~Dvit~E~E 73 (354)
T Consensus 2 ~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~vvfp~lh 70 (317)
T COG1181 2 KMKVAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGL--WMLDKE---------VTKRVLQKADVVFPVLH 70 (317)
T ss_pred CEEEEEEECCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCE--EEECCC---------HHHHHHCCCCEEEEECC
T ss_conf 6699998577537306999658999998761487158873246632--785031---------01222026987787155
Q ss_pred --CCCHHHHHHHHH--CCCC-CCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHH----HHHHHHHHCCCCEEEEECC
Q ss_conf --221133344430--2003-487677876315278888876505886743210006----8888641001312554023
Q gi|254780158|r 74 --NIPEKSISYLST--LLPT-YPSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQ----ESLTNILGGFKGKGILKTR 144 (354)
Q Consensus 74 --~i~~~~l~~l~~--~~~v-~P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~----~el~~~~~~~g~P~vlKp~ 144 (354)
T Consensus 71 G~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~ 150 (317)
T COG1181 71 GPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPA 150 (317)
T ss_pred CCCCCCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECC
T ss_conf 88888706999999709987607644533235099998899867865123567533452047888774146887899858
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHC--CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCC-CCE--------
Q ss_conf 4675556645446746778987513--55501011114564433201014665413997053345435-550--------
Q gi|254780158|r 145 RLGYDGKGQKVYHENDCTQNLYASL--GNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVN-GIL-------- 213 (354)
Q Consensus 145 ~~GydGkG~~~i~~~~~l~~~~~~~--~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~-gil-------- 213 (354)
T Consensus 151 ~~gSS-vg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~ 227 (317)
T COG1181 151 REGSS-VGRSPVNVEGDLQSALELAFKYDRDVLREQGIT-GREIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLS 227 (317)
T ss_pred CCEEE-EEEEECCEECCHHHHHHHHHHHCCCCEECCCCC-CCEEEEEECCCCC-CCEECCCCEEECCCCEEEEEECCCCC
T ss_conf 73113-679988350436999999998478512003776-6558986358865-52444761681699869860001457
Q ss_pred ---EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCEEEEEEECCCCCCCEE
Q ss_conf ---589852787878999999998867754024677531045538-840899941257045604
Q gi|254780158|r 214 ---HKSIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTN-DGNVIANEMAPRVHNSGH 273 (354)
Q Consensus 214 ---~~s~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~-dg~i~vnEiaPR~Hnsgh 273 (354)
T Consensus 228 ~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~ 291 (317)
T COG1181 228 TGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAM 291 (317)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf 8984353788999889999999999999860888758887999878998999987089987653