HHsearch alignment for GI: 254780158 and conserved domain: COG1181

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.86  E-value=7.7e-20  Score=153.47  Aligned_cols=257  Identities=13%  Similarity=0.129  Sum_probs=182.7

Q ss_pred             CCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECCC
Q ss_conf             87899980989---------899999999887978999967677713422682798789999999999741999998772
Q gi|254780158|r    3 KKTIGIIGGGQ---------LARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFADICDYATYESE   73 (354)
Q Consensus         3 ~k~IgIlG~Gq---------L~rml~~aA~~lG~~v~v~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~~~~~Dvit~E~E   73 (354)
T Consensus         2 ~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~vvfp~lh   70 (317)
T COG1181           2 KMKVAVLLGGRSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGL--WMLDKE---------VTKRVLQKADVVFPVLH   70 (317)
T ss_pred             CEEEEEEECCCCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCE--EEECCC---------HHHHHHCCCCEEEEECC
T ss_conf             6699998577537306999658999998761487158873246632--785031---------01222026987787155


Q ss_pred             --CCCHHHHHHHHH--CCCC-CCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHH----HHHHHHHHCCCCEEEEECC
Q ss_conf             --221133344430--2003-487677876315278888876505886743210006----8888641001312554023
Q gi|254780158|r   74 --NIPEKSISYLST--LLPT-YPSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQ----ESLTNILGGFKGKGILKTR  144 (354)
Q Consensus        74 --~i~~~~l~~l~~--~~~v-~P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~----~el~~~~~~~g~P~vlKp~  144 (354)
T Consensus        71 G~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~  150 (317)
T COG1181          71 GPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPA  150 (317)
T ss_pred             CCCCCCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCEEEECC
T ss_conf             88888706999999709987607644533235099998899867865123567533452047888774146887899858


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHC--CCCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCC-CCE--------
Q ss_conf             4675556645446746778987513--55501011114564433201014665413997053345435-550--------
Q gi|254780158|r  145 RLGYDGKGQKVYHENDCTQNLYASL--GNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVN-GIL--------  213 (354)
Q Consensus       145 ~~GydGkG~~~i~~~~~l~~~~~~~--~~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~-gil--------  213 (354)
T Consensus       151 ~~gSS-vg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~-~rei~v~vl~~~~-~~~~l~~~eI~~~~~~fydye~Ky~~  227 (317)
T COG1181         151 REGSS-VGRSPVNVEGDLQSALELAFKYDRDVLREQGIT-GREIEVGVLGNDY-EEQALPLGEIPPKGEEFYDYEAKYLS  227 (317)
T ss_pred             CCEEE-EEEEECCEECCHHHHHHHHHHHCCCCEECCCCC-CCEEEEEECCCCC-CCEECCCCEEECCCCEEEEEECCCCC
T ss_conf             73113-679988350436999999998478512003776-6558986358865-52444761681699869860001457


Q ss_pred             ---EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCEEEEEEECCCCCCCEE
Q ss_conf             ---589852787878999999998867754024677531045538-840899941257045604
Q gi|254780158|r  214 ---HKSIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTN-DGNVIANEMAPRVHNSGH  273 (354)
Q Consensus       214 ---~~s~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~-dg~i~vnEiaPR~Hnsgh  273 (354)
T Consensus       228 ~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~  291 (317)
T COG1181         228 TGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAM  291 (317)
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf             8984353788999889999999999999860888758887999878998999987089987653