HHsearch alignment for GI: 254780158 and conserved domain: PRK01372
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=99.97 E-value=3.1e-29 Score=216.71 Aligned_cols=245 Identities=15% Similarity=0.157 Sum_probs=186.2
Q ss_pred CCEEEEECCCH---------HHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECC-
Q ss_conf 87899980989---------89999999988797899996767771342268279878999999999974199999877-
Q gi|254780158|r 3 KKTIGIIGGGQ---------LARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFADICDYATYES- 72 (354)
Q Consensus 3 ~k~IgIlG~Gq---------L~rml~~aA~~lG~~v~v~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~~~~~Dvit~E~- 72 (354)
T Consensus 4 ~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~~~----------------~~l~--~~~~D~vf~~lH 65 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDPA----------------AELK--ELGFDRVFNALH 65 (304)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH----------------HHHH--HCCCCEEEEECC
T ss_conf 7718999367871289999999999998837599799982896467----------------7875--339999999068
Q ss_pred CCC--CHHHHHHHHH-CCCC-CCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 222--1133344430-2003-48767787631527888887650588674321000688886410013125540234675
Q gi|254780158|r 73 ENI--PEKSISYLST-LLPT-YPSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKTRRLGY 148 (354)
Q Consensus 73 E~i--~~~~l~~l~~-~~~v-~P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~g~P~vlKp~~~Gy 148 (354)
T Consensus 66 G~~GEDG~iQglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~~l~~P~iVKP~~~GS 145 (304)
T PRK01372 66 GRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAIDKLGLPLVVKPAREGS 145 (304)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99985649999999859983579989987765389999999986999898499865313999987618987997668886
Q ss_pred CCCCCCCCCCHHHHHHHHHHCC--CCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCE----------EEE
Q ss_conf 5566454467467789875135--5501011114564433201014665413997053345435550----------589
Q gi|254780158|r 149 DGKGQKVYHENDCTQNLYASLG--NVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL----------HKS 216 (354)
Q Consensus 149 dGkG~~~i~~~~~l~~~~~~~~--~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~~~~gil----------~~s 216 (354)
T Consensus 146 S-iGv~~V~~~~el~~ai~~a~~~~~~vLvE~~I~-GrEitv~Vlg~---~--~lp~~eI~~~~~fyDy~aKY~~~~s~~ 218 (304)
T PRK01372 146 S-VGVTKVKEADELPAALELAFKYDDEVLVEKYIK-GRELTVAVLGG---K--ALPVIRIVPPGEFYDYEAKYLAGDTQY 218 (304)
T ss_pred C-CCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEC-CEEEEEEEECC---C--CCCEEEEECCCCCCCHHHCCCCCCCCE
T ss_conf 6-653896698899999999874488625450256-56999999899---7--775389945998757766125577411
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCE
Q ss_conf 85278787899999999886775402467753104553884089994125704560
Q gi|254780158|r 217 IVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRVHNSG 272 (354)
Q Consensus 217 ~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~dg~i~vnEiaPR~Hnsg 272 (354)
T Consensus 219 ~~Pa~l~~~~~~~i~~~a~~~~~aLg~~g~aRvDf~~~~~g~~~~lEiNt~PGmT~ 274 (304)
T PRK01372 219 LCPAGLPAELEAELQALALRAYKALGCRGWGRVDFMLDEDGKPYLLEVNTSPGMTS 274 (304)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 00689999999999999999999849973698899990799789998339999874