HHsearch alignment for GI: 254780158 and conserved domain: TIGR02144
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=99.87 E-value=9.4e-21 Score=159.59 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=167.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCH----HHHHHHH-HCCCC
Q ss_conf 999999998879789999676777134226827987899999999997419999987722211----3334443-02003
Q gi|254780158|r 15 ARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFADICDYATYESENIPE----KSISYLS-TLLPT 89 (354)
Q Consensus 15 ~rml~~aA~~lG~~v~v~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~~~~~Dvit~E~E~i~~----~~l~~l~-~~~~v 89 (354)
T Consensus 12 EKmL~e~l~~lg~~v~~i~~~~~~--~~~~d------~~----i~~-~~~~dv~i~-R-~VS~~R~L~~a~~~E~~G~~~ 76 (289)
T TIGR02144 12 EKMLLEELEKLGLQVRVIYVPELA--LPFGD------LG----IKE-LEDLDVAII-R-NVSQSRALYSAFLLEAVGVPT 76 (289)
T ss_pred HHHHHHHHHHHCCCCEEEECCCEE--ECCCC------CC----CCH-HCCCCEEEE-C-HHHHHHHHHHHHHHHHCCCEE
T ss_conf 999999998728973266203402--20788------56----300-037556898-3-034567999999998489715
Q ss_pred CCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 4876778763152788888765058867432100068888641001312554023467555664544674677898751-
Q gi|254780158|r 90 YPSSRAIEISQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYAS- 168 (354)
Q Consensus 90 ~P~~~al~~~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~- 168 (354)
T Consensus 77 iN~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSW-GRlV~~~~d~~~~~~llEh~ 155 (289)
T TIGR02144 77 INSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSW-GRLVSKIRDKDELESLLEHK 155 (289)
T ss_pred ECCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCH-HHHHHHHCCHHHHHHHHHHH
T ss_conf 27758987504618899999966788983589828689999999708988970888843-78876403788988999999
Q ss_pred --CCC---CCEEHHHCCCC-CCCCCCEECCCCCCCEEEEECCC--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --355---50101111456-44332010146654139970533--45435550589852787878999999998867754
Q gi|254780158|r 169 --LGN---VPLILERFTDF-NCEISIIAARSLNGSICFYDPIQ--NTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET 240 (354)
Q Consensus 169 --~~~---~~~iiEe~I~~-~~Eisviv~r~~~G~~~~~p~~e--n~~~~gil~~s~~Pa~i~~~~~~~a~~~a~~i~~~ 240 (354)
T Consensus 156 e~~~~~~~~~~y~QEfi~KPgRDIR~fViGd~-~~~AIYR~~~P~~W~TNtArGG~A~P~~~~~----e~~~La~kA~~a 230 (289)
T TIGR02144 156 EVLGGSQLKLYYVQEFINKPGRDIRVFVIGDE-AIAAIYRYSEPNHWRTNTARGGKAEPCKIDE----EVEELAVKAAEA 230 (289)
T ss_pred HHHCCCCCCEEEEEEEECCCCCEEEEEEECCC-CEEEEEECCCCCCHHHHHHCCCCCCCCCCCH----HHHHHHHHHHHH
T ss_conf 98679763337999887188960899999797-3167883388530255630588447887687----689999999999
Q ss_pred CCCCCCCCCEEEECCCC-----EEEEEEECCCC--CCCEEEE
Q ss_conf 02467753104553884-----08999412570--4560462
Q gi|254780158|r 241 LDYVGILCIEFFVTNDG-----NVIANEMAPRV--HNSGHWT 275 (354)
Q Consensus 241 L~~~Gv~~VEffv~~dg-----~i~vnEiaPR~--Hnsgh~t 275 (354)
T Consensus 231 vgg-~~~~iDi~Es~~rqndW~GlLV~EVN~~~EFKN~~rvT 271 (289)
T TIGR02144 231 VGG-EVVGIDIVESKRRQNDWGGLLVNEVNGVPEFKNTVRVT 271 (289)
T ss_pred HCC-EEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEC
T ss_conf 788-27899886433445443786897356897727857774