HHsearch alignment for GI: 254780158 and conserved domain: TIGR02291
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=98.06 E-value=4.4e-05 Score=54.07 Aligned_cols=182 Identities=17% Similarity=0.225 Sum_probs=101.2
Q ss_pred HHHCCHHHHHHHHHCCCCCCC-CCCCCHHHHHHH---HHHCCCCEEEEECCCCCCCCCCCCCCCCH--------------
Q ss_conf 631527888887650588674-321000688886---41001312554023467555664544674--------------
Q gi|254780158|r 98 ISQDRLYEKKFFQESGLTTVD-FYEINSQESLTN---ILGGFKGKGILKTRRLGYDGKGQKVYHEN-------------- 159 (354)
Q Consensus 98 ~~~dK~~~K~~l~~~gipt~~-~~~v~s~~el~~---~~~~~g~P~vlKp~~~GydGkG~~~i~~~-------------- 159 (354)
T Consensus 34 lVDDKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~-dFVIKPAqG-sGG~GIlVit~r~~~ryr~~sG~~i~ 111 (320)
T TIGR02291 34 LVDDKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHE-DFVIKPAQG-SGGDGILVITDRLDERYRKSSGALIS 111 (320)
T ss_pred CCCCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCC-CCEEECCCC-CCCCEEEEECCCCCCCEECCCCCCCC
T ss_conf 2031367889987336711013010023466543466627889-836726606-79872799703668840354101015
Q ss_pred -HHHHHHHHH-------CC--CCCEEHHHCCCCCCCC---C--------CEECC-------------CCCCCEEEEECCC
Q ss_conf -677898751-------35--5501011114564433---2--------01014-------------6654139970533
Q gi|254780158|r 160 -DCTQNLYAS-------LG--NVPLILERFTDFNCEI---S--------IIAAR-------------SLNGSICFYDPIQ 205 (354)
Q Consensus 160 -~~l~~~~~~-------~~--~~~~iiEe~I~~~~Ei---s--------viv~r-------------~~~G~~~~~p~~e 205 (354)
T Consensus 112 ~eeiE~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGK-------A 184 (320)
T TIGR02291 112 KEEIERHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGK-------A 184 (320)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCC-------C
T ss_conf 456778888888777650799773688532010534477111345872689641861021002765678883-------0
Q ss_pred CCCCCCC-----------EEEEEE-------C---CCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEE
Q ss_conf 4543555-----------058985-------2---7878----7899999999886775402467753104553884089
Q gi|254780158|r 206 NTHVNGI-----------LHKSIV-------P---ASIS----QKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVI 260 (354)
Q Consensus 206 n~~~~gi-----------l~~s~~-------P---a~i~----~~~~~~a~~~a~~i~~~L~~~Gv~~VEffv~~dg~i~ 260 (354)
T Consensus 185 NLHQGAvGvGiDlaTG~t~~a~w~n~pi~~HPDTg~~~sglq~PhW-~~ll~LAa~c~e-l~GLGY~GvD~VLDke~GPl 262 (320)
T TIGR02291 185 NLHQGAVGVGIDLATGKTLRAVWLNQPIEKHPDTGKDVSGLQVPHW-EKLLKLAAECYE-LVGLGYLGVDMVLDKEKGPL 262 (320)
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCH-HHHHHHHHHHHH-HCCCCCCCEEEEEECCCCCE
T ss_conf 2124602420231145032124206761458388875351016677-789999987754-30676002106874579881
Q ss_pred EEEECCCCCCCEEEEHH---HCCCCHHHHHHHHHHCC
Q ss_conf 99412570456046210---01358899999998188
Q gi|254780158|r 261 ANEMAPRVHNSGHWTEA---SCVISQFEQHIRSITNL 294 (354)
Q Consensus 261 vnEiaPR~Hnsgh~t~~---~~~~sqfe~h~rai~gl 294 (354)
T Consensus 263 vLELNARP---GL~-IQIAN~~Gl~~Rl~~~~a~Le~ 295 (320)
T TIGR02291 263 VLELNARP---GLA-IQIANDAGLLPRLKEVEAKLEE 295 (320)
T ss_pred EEEECCCC---CCH-HHHHCCCCCCHHHHHHHHHCCC
T ss_conf 78644788---721-2231314533678999964055