HHsearch alignment for GI: 254780158 and conserved domain: cd05293
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.88 E-value=0.45 Score=27.12 Aligned_cols=111 Identities=9% Similarity=0.100 Sum_probs=58.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCHHHCCCEEE---------ECCCCCHHHHHHHHHHCCEEEEC
Q ss_conf 8789998098989999999988797--899996767771342268279---------87899999999997419999987
Q gi|254780158|r 3 KKTIGIIGGGQLARMLSMSAARLGF--CTVILDPDSNCPANQVSNQQI---------AARHDDIKALNTFADICDYATYE 71 (354)
Q Consensus 3 ~k~IgIlG~GqL~rml~~aA~~lG~--~v~v~d~~~~~pa~~~ad~~~---------~~~~~D~~~l~~~~~~~Dvit~E 71 (354)
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~----~~~~aDvVVit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS----VTANSKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHH----HHCCCCEEEEC
T ss_conf 88699989788899999999966998879999388983326888866040127985599379999----96899999988
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHH-HHHCCHHHHHHHHHCCC--CCCCCCCCCHHHHHHH
Q ss_conf 72221133344430200348767787-63152788888765058--8674321000688886
Q gi|254780158|r 72 SENIPEKSISYLSTLLPTYPSSRAIE-ISQDRLYEKKFFQESGL--TTVDFYEINSQESLTN 130 (354)
Q Consensus 72 ~E~i~~~~l~~l~~~~~v~P~~~al~-~~~dK~~~K~~l~~~gi--pt~~~~~v~s~~el~~ 130 (354)
T Consensus 79 AG-------------~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~p~~ivivvsNPvDv~t 127 (312)
T cd05293 79 AG-------------ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMT 127 (312)
T ss_pred CC-------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 99-------------99998988899999889999999999884199846996689189999