HHsearch alignment for GI: 254780158 and conserved domain: pfam02254

>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.

Probab=96.93  E-value=0.003  Score=41.79  Aligned_cols=106  Identities=19%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHCCCEEEECCCCCHHHHHHH-HHHCCEEEECCCCCCHHHHHH
Q ss_conf             9998098989999999988797899996767771--3422682798789999999999-741999998772221133344
Q gi|254780158|r    6 IGIIGGGQLARMLSMSAARLGFCTVILDPDSNCP--ANQVSNQQIAARHDDIKALNTF-ADICDYATYESENIPEKSISY   82 (354)
Q Consensus         6 IgIlG~GqL~rml~~aA~~lG~~v~v~d~~~~~p--a~~~ad~~~~~~~~D~~~l~~~-~~~~Dvit~E~E~i~~~~l~~   82 (354)
T Consensus         1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d-~~n~~~   78 (115)
T pfam02254         1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDD-EANILI   78 (115)
T ss_pred             CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCH-HHHHHH
T ss_conf             999878889999999998089-999999987998778866986999956886678761920287999962984-999999


Q ss_pred             HHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             43020034876778763152788888765058
Q gi|254780158|r   83 LSTLLPTYPSSRAIEISQDRLYEKKFFQESGL  114 (354)
Q Consensus        83 l~~~~~v~P~~~al~~~~dK~~~K~~l~~~gi  114 (354)
T Consensus        79 ~~~~r~~~~~~~iiar~~~~~~~~-~l~~~Ga  109 (115)
T pfam02254        79 VLLARELNPAKKIIARANDPEHAE-LLRRLGA  109 (115)
T ss_pred             HHHHHHHCCCCEEEEEECCHHHHH-HHHHCCC
T ss_conf             999999789980999987899999-9997698