HHsearch alignment for GI: 254780158 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=7e-39 Score=281.65 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC--------C
Q ss_conf 52788888765058867432--1000688886410013125540234675556645446746778987513--------5
Q gi|254780158|r 101 DRLYEKKFFQESGLTTVDFY--EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL--------G 170 (354)
Q Consensus 101 dK~~~K~~l~~~gipt~~~~--~v~s~~el~~~~~~~g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~~--------~ 170 (354)
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g-~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~ 79 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGG-GGLGMGIARNEEELAELFALALAEAPAAFG 79 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCC-CCCCCEEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9899999999869891998788879999999999985997899737778-998751241277899999999875143169
Q ss_pred CCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCC-CCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5501011114564433201014665413997053345-43555058985278-787899999999886775402467753
Q gi|254780158|r 171 NVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNT-HVNGILHKSIVPAS-ISQKTSLLAHSAMRKVLETLDYVGILC 248 (354)
Q Consensus 171 ~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~-~~~gil~~s~~Pa~-i~~~~~~~a~~~a~~i~~~L~~~Gv~~ 248 (354)
T Consensus 80 ~~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~G~~~ 159 (211)
T pfam02786 80 NPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGT 159 (211)
T ss_pred CCCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEECCCE
T ss_conf 98389974047765899999982799899999633225033584446817999999999999999999875264423324
Q ss_pred CEEEEC-CCCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 104553-884089994125704560462100135889999999818899970
Q gi|254780158|r 249 IEFFVT-NDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNP 299 (354)
Q Consensus 249 VEffv~-~dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~rai~glpl~~~ 299 (354)
T Consensus 160 vef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e~ 211 (211)
T pfam02786 160 VEFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPEL 211 (211)
T ss_pred EEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 7899967999599996708968347788998794899999999779997869