HHsearch alignment for GI: 254780158 and conserved domain: pfam02786

>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00  E-value=7e-39  Score=281.65  Aligned_cols=198  Identities=19%  Similarity=0.201  Sum_probs=173.9

Q ss_pred             CCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC--------C
Q ss_conf             52788888765058867432--1000688886410013125540234675556645446746778987513--------5
Q gi|254780158|r  101 DRLYEKKFFQESGLTTVDFY--EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL--------G  170 (354)
Q Consensus       101 dK~~~K~~l~~~gipt~~~~--~v~s~~el~~~~~~~g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~~--------~  170 (354)
T Consensus         1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g-~g~G~~~v~~~~eL~~a~~~a~~~a~~~~~   79 (211)
T pfam02786         1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGG-GGLGMGIARNEEELAELFALALAEAPAAFG   79 (211)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCC-CCCCCEEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9899999999869891998788879999999999985997899737778-998751241277899999999875143169


Q ss_pred             CCCEEHHHCCCCCCCCCCEECCCCCCCEEEEECCCCC-CCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             5501011114564433201014665413997053345-43555058985278-787899999999886775402467753
Q gi|254780158|r  171 NVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNT-HVNGILHKSIVPAS-ISQKTSLLAHSAMRKVLETLDYVGILC  248 (354)
Q Consensus       171 ~~~~iiEe~I~~~~Eisviv~r~~~G~~~~~p~~en~-~~~gil~~s~~Pa~-i~~~~~~~a~~~a~~i~~~L~~~Gv~~  248 (354)
T Consensus        80 ~~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~lg~~G~~~  159 (211)
T pfam02786        80 NPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDEERQMLREAAVKIARHLGYVGAGT  159 (211)
T ss_pred             CCCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEECCCE
T ss_conf             98389974047765899999982799899999633225033584446817999999999999999999875264423324


Q ss_pred             CEEEEC-CCCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             104553-884089994125704560462100135889999999818899970
Q gi|254780158|r  249 IEFFVT-NDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNP  299 (354)
Q Consensus       249 VEffv~-~dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~rai~glpl~~~  299 (354)
T Consensus       160 vef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e~  211 (211)
T pfam02786       160 VEFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPEL  211 (211)
T ss_pred             EEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf             7899967999599996708968347788998794899999999779997869