HHsearch alignment for GI: 254780158 and conserved domain: pfam07478

>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.95  E-value=1.2e-27  Score=206.05  Aligned_cols=177  Identities=16%  Similarity=0.234  Sum_probs=145.9

Q ss_pred             HHHHCCCCCCCCCCCCHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEHHHCCC
Q ss_conf             8765058867432100068----88864100131255402346755566454467467789875135--55010111145
Q gi|254780158|r  108 FFQESGLTTVDFYEINSQE----SLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLG--NVPLILERFTD  181 (354)
Q Consensus       108 ~l~~~gipt~~~~~v~s~~----el~~~~~~~g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~~~--~~~~iiEe~I~  181 (354)
T Consensus         1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~g-ss~Gv~~v~~~~el~~~i~~~~~~~~~vlVEefi~   79 (201)
T pfam07478         1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLG-SSVGISKVTSREELQSAIEEAFQYDNKVLIEEAIE   79 (201)
T ss_pred             CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             95565999999089825323435799999865998899989999-86687999584687999999874598079998566


Q ss_pred             CCCCCCCEECCCCCCCEEEEECCCCCCCCCCEE----------EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             644332010146654139970533454355505----------8985278787899999999886775402467753104
Q gi|254780158|r  182 FNCEISIIAARSLNGSICFYDPIQNTHVNGILH----------KSIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEF  251 (354)
Q Consensus       182 ~~~Eisviv~r~~~G~~~~~p~~en~~~~gil~----------~s~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEf  251 (354)
T Consensus        80 -G~E~~v~vl~~--~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i~~~A~~~~~aLg~~g~~rvD~  156 (201)
T pfam07478        80 -GREIECAVLGN--EDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDF  156 (201)
T ss_pred             -CCEEEEEEEEC--CCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             -96799999708--980898758994377502676801368723761566859999999999999999848876057999


Q ss_pred             EECCCCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf             5538840899941257045604621001358899999998188999
Q gi|254780158|r  252 FVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLG  297 (354)
Q Consensus       252 fv~~dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~rai~glpl~  297 (354)
T Consensus       157 ~~d~~g~~~vlEvN~~Pg~~--------~~s~~~~~a~-~~G~sy~  193 (201)
T pfam07478       157 FLTEDGEIYLNEVNTMPGFT--------SISLYPRMWA-AAGLSYP  193 (201)
T ss_pred             EECCCCCEEEEEECCCCCCC--------CCCHHHHHHH-HCCCCHH
T ss_conf             99689949999954979998--------6769999999-8199999