HHsearch alignment for GI: 254780158 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.95 E-value=1.2e-27 Score=206.05 Aligned_cols=177 Identities=16% Similarity=0.234 Sum_probs=145.9
Q ss_pred HHHHCCCCCCCCCCCCHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEHHHCCC
Q ss_conf 8765058867432100068----88864100131255402346755566454467467789875135--55010111145
Q gi|254780158|r 108 FFQESGLTTVDFYEINSQE----SLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLG--NVPLILERFTD 181 (354)
Q Consensus 108 ~l~~~gipt~~~~~v~s~~----el~~~~~~~g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~~~--~~~~iiEe~I~ 181 (354)
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~g-ss~Gv~~v~~~~el~~~i~~~~~~~~~vlVEefi~ 79 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLG-SSVGISKVTSREELQSAIEEAFQYDNKVLIEEAIE 79 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 95565999999089825323435799999865998899989999-86687999584687999999874598079998566
Q ss_pred CCCCCCCEECCCCCCCEEEEECCCCCCCCCCEE----------EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 644332010146654139970533454355505----------8985278787899999999886775402467753104
Q gi|254780158|r 182 FNCEISIIAARSLNGSICFYDPIQNTHVNGILH----------KSIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEF 251 (354)
Q Consensus 182 ~~~Eisviv~r~~~G~~~~~p~~en~~~~gil~----------~s~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~~VEf 251 (354)
T Consensus 80 -G~E~~v~vl~~--~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i~~~A~~~~~aLg~~g~~rvD~ 156 (201)
T pfam07478 80 -GREIECAVLGN--EDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDF 156 (201)
T ss_pred -CCEEEEEEEEC--CCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -96799999708--980898758994377502676801368723761566859999999999999999848876057999
Q ss_pred EECCCCEEEEEEECCCCCCCEEEEHHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 5538840899941257045604621001358899999998188999
Q gi|254780158|r 252 FVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLG 297 (354)
Q Consensus 252 fv~~dg~i~vnEiaPR~Hnsgh~t~~~~~~sqfe~h~rai~glpl~ 297 (354)
T Consensus 157 ~~d~~g~~~vlEvN~~Pg~~--------~~s~~~~~a~-~~G~sy~ 193 (201)
T pfam07478 157 FLTEDGEIYLNEVNTMPGFT--------SISLYPRMWA-AAGLSYP 193 (201)
T ss_pred EECCCCCEEEEEECCCCCCC--------CCCHHHHHHH-HCCCCHH
T ss_conf 99689949999954979998--------6769999999-8199999