HHsearch alignment for GI: 254780158 and conserved domain: pfam08443
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.88 E-value=1.6e-22 Score=171.59 Aligned_cols=171 Identities=14% Similarity=0.205 Sum_probs=128.5
Q ss_pred HHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC--CCCCEE
Q ss_conf 3152788888765058867432100068888641001-3125540234675556645446746778987513--555010
Q gi|254780158|r 99 SQDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGF-KGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL--GNVPLI 175 (354)
Q Consensus 99 ~~dK~~~K~~l~~~gipt~~~~~v~s~~el~~~~~~~-g~P~vlKp~~~GydGkG~~~i~~~~~l~~~~~~~--~~~~~i 175 (354)
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~-g~gV~~v~~~~el~~~~~~~~~~~~~vl 79 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQ-GIGVFLAEDEQSLEQLLEAFKWLKNQIL 79 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCC-CCCEEEEECHHHHHHHHHHHHHCCCCEE
T ss_conf 978899999999879797998998899999999998089838996788999-8455886063777788888863487377
Q ss_pred HHHCCCC--CCCCCCEECCCCCCCEEEEECCCCCCCCCCEEE------EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1111456--443320101466541399705334543555058------98527878789999999988677540246775
Q gi|254780158|r 176 LERFTDF--NCEISIIAARSLNGSICFYDPIQNTHVNGILHK------SIVPASISQKTSLLAHSAMRKVLETLDYVGIL 247 (354)
Q Consensus 176 iEe~I~~--~~Eisviv~r~~~G~~~~~p~~en~~~~gil~~------s~~Pa~i~~~~~~~a~~~a~~i~~~L~~~Gv~ 247 (354)
T Consensus 80 vqefI~~~~~~dirv~vi---~~~~~--~~~~~~~~~~~~~~n~~~g~~~~~~~l~~e----~~e~a~~a~~algl-~~~ 149 (190)
T pfam08443 80 VQEFIAEAGNRDIRCLVV---GGEVV--GAIHRQSNEGDFRTNLHRGGVAEPYQLSQE----EEEIAIKAAQAMGL-DVL 149 (190)
T ss_pred EEEEEECCCCCEEEEEEE---CCCEE--EEEEEECCCCCCCCCCCCCCEECCCCCCHH----HHHHHHHHHHHHCC-CEE
T ss_conf 555660478854899996---06336--789997466762143246862458766889----99999999997389-979
Q ss_pred CCEEEECCCCEEEEEEECCCCCCCEEEEH-HHCCCCHH
Q ss_conf 31045538840899941257045604621-00135889
Q gi|254780158|r 248 CIEFFVTNDGNVIANEMAPRVHNSGHWTE-ASCVISQF 284 (354)
Q Consensus 248 ~VEffv~~dg~i~vnEiaPR~Hnsgh~t~-~~~~~sqf 284 (354)
T Consensus 150 gVD~~~~~~g-~~vlEvN~~P---g~~~~~~~~g~~i~ 183 (190)
T pfam08443 150 GVDIFRSKRG-LLVCEVNSSP---GLKGIERTTGINIA 183 (190)
T ss_pred EEEEEEECCC-EEEEEECCCC---CCHHHHHHHCCCHH
T ss_conf 9999997996-7999966984---60478988794999