BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] (354 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/354 (100%), Positives = 354/354 (100%) Query: 1 MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNT 60 MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNT Sbjct: 1 MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNT 60 Query: 61 FADICDYATYESENIPEKSISYLSTLLPTYPSSRAIEISQDRLYEKKFFQESGLTTVDFY 120 FADICDYATYESENIPEKSISYLSTLLPTYPSSRAIEISQDRLYEKKFFQESGLTTVDFY Sbjct: 61 FADICDYATYESENIPEKSISYLSTLLPTYPSSRAIEISQDRLYEKKFFQESGLTTVDFY 120 Query: 121 EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLGNVPLILERFT 180 EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLGNVPLILERFT Sbjct: 121 EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLGNVPLILERFT 180 Query: 181 DFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET 240 DFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET Sbjct: 181 DFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET 240 Query: 241 LDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNPN 300 LDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNPN Sbjct: 241 LDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNPN 300 Query: 301 RHSNCVMYNIIGSDIDQYEQWLHCDSSVIHIYGKSQTLCGRKMGHVTQIYPKNP 354 RHSNCVMYNIIGSDIDQYEQWLHCDSSVIHIYGKSQTLCGRKMGHVTQIYPKNP Sbjct: 301 RHSNCVMYNIIGSDIDQYEQWLHCDSSVIHIYGKSQTLCGRKMGHVTQIYPKNP 354 >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 26.9 bits (58), Expect = 0.46, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 11/16 (68%) Query: 26 GFCTVILDPDSNCPAN 41 GF V L+PDSN P N Sbjct: 82 GFAAVALNPDSNAPKN 97 >gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 26.2 bits (56), Expect = 0.88, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 21/35 (60%) Query: 208 HVNGILHKSIVPASISQKTSLLAHSAMRKVLETLD 242 H++G+L KS+ +S+ LL ++R+V E D Sbjct: 258 HISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFD 292 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 26.2 bits (56), Expect = 0.90, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 154 KVYHENDCTQNLYASLGNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL 213 K + ND T + LG PL+ + + EI + A N + I++ GI Sbjct: 814 KRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEID-VDALCQNDQVIVVGIIEHIEEAGI- 871 Query: 214 HK-----SIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRV 268 H S+ S+SQ+ S + + L+ +G++ +++ + DG + E+ PR Sbjct: 872 HSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRA 930 Query: 269 HNS 271 + Sbjct: 931 SRT 933 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 2 KKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTF 61 +++ IG + GGQ R+ + G ++LD P N + + ++A D AL F Sbjct: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDE----PTNDLDTETLSALED---ALENF 484 Query: 62 A 62 A Sbjct: 485 A 485 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 1 MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPD 35 MK+ IGIIG G + LS++ GF + + D Sbjct: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35 >gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Length = 388 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%) Query: 119 FYEIN-SQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL 169 F +IN +QE LT++LG K ILKT + + +++Y E + + L Sbjct: 306 FKDINRAQELLTSVLGEEAFKRILKTPK-----ELEQLYKEQKVSDEFWEEL 352 >gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus str. psy62] Length = 297 Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 16/21 (76%) Query: 185 EISIIAARSLNGSICFYDPIQ 205 ++S+I AR++NG I F D ++ Sbjct: 109 KVSLITARAMNGEIPFQDSLR 129 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 25.0 bits (53), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 8 IIGGGQLARMLSMSAARLGFCTVILDPDS 36 IIG G + ++ AA+ GF T ++ P S Sbjct: 8 IIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 91 PSSRAIEISQDRLYEKKFFQESGLTTVDF 119 PS RA ++ + + KKF + G+ T + Sbjct: 92 PSQRAAKLESSKSFAKKFCTKYGIPTATY 120 >gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 23.9 bits (50), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%) Query: 18 LSMSAARLGFCT--VILDPDSNCPANQVSNQQIAARHDDIKALNTFADICD------YAT 69 LS+S LG T ++D D++C ++ Q+I+++ K F D+ + Sbjct: 53 LSLSLGHLGTITHITVIDSDADCII--LNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLI 110 Query: 70 YESENIPEKS 79 S NIP K+ Sbjct: 111 ETSNNIPTKA 120 >gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus str. psy62] Length = 666 Score = 23.5 bits (49), Expect = 6.0, Method: Compositional matrix adjust. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 15/159 (9%) Query: 100 QDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHEN 159 D + +FF T + S ++L + G++G G+ +G+ + E+ Sbjct: 110 HDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS-----FKES 164 Query: 160 DCTQNLYASLGNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVP 219 ++ A ++ R D ++I A L S+ F QN + S+ Sbjct: 165 AIKASMKA------FVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSS 218 Query: 220 ASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGN 258 +S ++ S + D + I+C+ FF+ G Sbjct: 219 GMVSHRS----FSFFGIDVHPHDSIAIICLLFFLGAMGK 253 >gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 23.1 bits (48), Expect = 6.6, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 8 IIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFADICDY 67 I+G G +R+ + G C I N N V A ++I AL + I + Sbjct: 261 ILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTS--SIVEV 318 Query: 68 ATYESENIPEKSI-----SYLSTLLPTYPSS--RAIEISQDRLY 104 ENI ++ I + L+ + S RA+EIS+ ++ Sbjct: 319 VQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMF 362 >gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter asiaticus str. psy62] Length = 1398 Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 231 HSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRVHN 270 HS +R +++D G + + T G +I E+ PR H Sbjct: 547 HSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHE 586 >gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 23.1 bits (48), Expect = 8.1, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 14/17 (82%) Query: 228 LLAHSAMRKVLETLDYV 244 +L+H ++KVL+TL Y+ Sbjct: 156 ILSHKRLQKVLKTLRYI 172 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 232,060 Number of Sequences: 1233 Number of extensions: 9678 Number of successful extensions: 34 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 18 length of query: 354 length of database: 328,796 effective HSP length: 75 effective length of query: 279 effective length of database: 236,321 effective search space: 65933559 effective search space used: 65933559 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)