BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole
carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str.
psy62]
         (354 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNT 60
           MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNT
Sbjct: 1   MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNT 60

Query: 61  FADICDYATYESENIPEKSISYLSTLLPTYPSSRAIEISQDRLYEKKFFQESGLTTVDFY 120
           FADICDYATYESENIPEKSISYLSTLLPTYPSSRAIEISQDRLYEKKFFQESGLTTVDFY
Sbjct: 61  FADICDYATYESENIPEKSISYLSTLLPTYPSSRAIEISQDRLYEKKFFQESGLTTVDFY 120

Query: 121 EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLGNVPLILERFT 180
           EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLGNVPLILERFT
Sbjct: 121 EINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASLGNVPLILERFT 180

Query: 181 DFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET 240
           DFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET
Sbjct: 181 DFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVPASISQKTSLLAHSAMRKVLET 240

Query: 241 LDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNPN 300
           LDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNPN
Sbjct: 241 LDYVGILCIEFFVTNDGNVIANEMAPRVHNSGHWTEASCVISQFEQHIRSITNLPLGNPN 300

Query: 301 RHSNCVMYNIIGSDIDQYEQWLHCDSSVIHIYGKSQTLCGRKMGHVTQIYPKNP 354
           RHSNCVMYNIIGSDIDQYEQWLHCDSSVIHIYGKSQTLCGRKMGHVTQIYPKNP
Sbjct: 301 RHSNCVMYNIIGSDIDQYEQWLHCDSSVIHIYGKSQTLCGRKMGHVTQIYPKNP 354


>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 122

 Score = 26.9 bits (58), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 26 GFCTVILDPDSNCPAN 41
          GF  V L+PDSN P N
Sbjct: 82 GFAAVALNPDSNAPKN 97


>gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 26.2 bits (56), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 208 HVNGILHKSIVPASISQKTSLLAHSAMRKVLETLD 242
           H++G+L KS+    +S+   LL   ++R+V E  D
Sbjct: 258 HISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFD 292


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 26.2 bits (56), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 154 KVYHENDCTQNLYASLGNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL 213
           K  + ND T  +   LG  PL+ + +     EI  + A   N  +     I++    GI 
Sbjct: 814 KRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEID-VDALCQNDQVIVVGIIEHIEEAGI- 871

Query: 214 HK-----SIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRV 268
           H      S+   S+SQ+      S  + +   L+ +G++ +++ +  DG +   E+ PR 
Sbjct: 872 HSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRA 930

Query: 269 HNS 271
             +
Sbjct: 931 SRT 933


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 25.8 bits (55), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 2   KKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTF 61
           +++ IG + GGQ  R+      + G   ++LD     P N +  + ++A  D   AL  F
Sbjct: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDE----PTNDLDTETLSALED---ALENF 484

Query: 62  A 62
           A
Sbjct: 485 A 485


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 475

 Score = 25.8 bits (55), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 1  MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPD 35
          MK+  IGIIG G +   LS++    GF   + + D
Sbjct: 1  MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35


>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 388

 Score = 25.4 bits (54), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 119 FYEIN-SQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL 169
           F +IN +QE LT++LG    K ILKT +     + +++Y E   +   +  L
Sbjct: 306 FKDINRAQELLTSVLGEEAFKRILKTPK-----ELEQLYKEQKVSDEFWEEL 352


>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 297

 Score = 25.4 bits (54), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 185 EISIIAARSLNGSICFYDPIQ 205
           ++S+I AR++NG I F D ++
Sbjct: 109 KVSLITARAMNGEIPFQDSLR 129


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 384

 Score = 25.0 bits (53), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 8  IIGGGQLARMLSMSAARLGFCTVILDPDS 36
          IIG G    + ++ AA+ GF T ++ P S
Sbjct: 8  IIGSGLAGSVAAIGAAKKGFLTALVSPRS 36


>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 424

 Score = 23.9 bits (50), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 91  PSSRAIEISQDRLYEKKFFQESGLTTVDF 119
           PS RA ++   + + KKF  + G+ T  +
Sbjct: 92  PSQRAAKLESSKSFAKKFCTKYGIPTATY 120


>gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate
           delta-isomerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 355

 Score = 23.9 bits (50), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 18  LSMSAARLGFCT--VILDPDSNCPANQVSNQQIAARHDDIKALNTFADICD------YAT 69
           LS+S   LG  T   ++D D++C    ++ Q+I+++    K    F D+        +  
Sbjct: 53  LSLSLGHLGTITHITVIDSDADCII--LNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLI 110

Query: 70  YESENIPEKS 79
             S NIP K+
Sbjct: 111 ETSNNIPTKA 120


>gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 666

 Score = 23.5 bits (49), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 15/159 (9%)

Query: 100 QDRLYEKKFFQESGLTTVDFYEINSQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHEN 159
            D  +  +FF      T     + S ++L  +  G++G G+     +G+       + E+
Sbjct: 110 HDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS-----FKES 164

Query: 160 DCTQNLYASLGNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGILHKSIVP 219
               ++ A       ++ R  D    ++I A   L  S+ F    QN      +  S+  
Sbjct: 165 AIKASMKA------FVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSS 218

Query: 220 ASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGN 258
             +S ++     S     +   D + I+C+ FF+   G 
Sbjct: 219 GMVSHRS----FSFFGIDVHPHDSIAIICLLFFLGAMGK 253


>gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 23.1 bits (48), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 8   IIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTFADICDY 67
           I+G G  +R+      + G C  I     N   N V     A   ++I AL +   I + 
Sbjct: 261 ILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTS--SIVEV 318

Query: 68  ATYESENIPEKSI-----SYLSTLLPTYPSS--RAIEISQDRLY 104
                ENI ++ I        + L+ +   S  RA+EIS+  ++
Sbjct: 319 VQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMF 362


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1398

 Score = 23.1 bits (48), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 231 HSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRVHN 270
           HS +R   +++D  G    + + T  G +I  E+ PR H 
Sbjct: 547 HSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHE 586


>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 23.1 bits (48), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 228 LLAHSAMRKVLETLDYV 244
           +L+H  ++KVL+TL Y+
Sbjct: 156 ILSHKRLQKVLKTLRYI 172


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,060
Number of Sequences: 1233
Number of extensions: 9678
Number of successful extensions: 34
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 18
length of query: 354
length of database: 328,796
effective HSP length: 75
effective length of query: 279
effective length of database: 236,321
effective search space: 65933559
effective search space used: 65933559
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)