Query gi|254780159|ref|YP_003064572.1| hypothetical protein CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 96
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 18:13:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780159.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2knc_B Integrin beta-3; trans 51.8 7.5 0.00022 19.4 1.7 36 58-93 27-62 (79)
2 >2k1k_A Ephrin type-A receptor 24.9 51 0.0015 14.7 3.7 28 47-74 11-38 (38)
3 >1s4x_A Integrin beta-3; cell 22.6 9 0.00027 18.9 -1.9 40 54-93 11-50 (67)
4 >2vz8_A Fatty acid synthase; t 20.4 46 0.0014 14.9 1.4 32 63-94 14-46 (58)
5 >1uw4_B UPF2, regulator of non 18.3 67 0.002 14.0 1.8 41 19-59 4-44 (131)
6 >3hhd_A Fatty acid synthase; t 18.0 45 0.0013 15.0 0.9 31 64-94 15-46 (58)
7 >1emz_A Envelope glycoprotein 12.7 91 0.0027 13.2 1.3 18 22-39 5-22 (26)
8 >1kqf_A FDH-N, formate dehydro 11.5 90 0.0027 13.3 1.0 25 33-57 30-54 (111)
9 >1cg7_A Protein (NON histone p 10.8 82 0.0024 13.5 0.6 13 13-25 23-35 (80)
10 >2cs1_A PMS1 protein homolog 1 10.3 87 0.0026 13.4 0.6 9 14-22 11-19 (92)
No 1
>>2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (B:)
Probab=51.81 E-value=7.5 Score=19.37 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 999999988875402348864344431112644222
Q gi|254780159|r 58 MSLLIILSFTIVQDRRSSPRIDSDIETSEWNSDKNQ 93 (96)
Q Consensus 58 mslliilsftivqdrrsspridsdietsewnsdknq 93 (96)
.-|++.--++..+|||.--|...+-..+.|+.+.|-
T Consensus 27 ~lLliwK~~~~i~DrrEy~kFEkE~~~akw~~~~NP 62 (79)
T 2knc_B 27 AALLIWKLLITIHDRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999987889999999999987678887896
No 2
>>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:)
Probab=24.88 E-value=51 Score=14.68 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999998887540234
Q gi|254780159|r 47 DMIASMICGLLMSLLIILSFTIVQDRRS 74 (96)
Q Consensus 47 dmiasmicgllmslliilsftivqdrrs 74 (96)
.-|...|-||+..+-.++.|-+...||.
T Consensus 11 geivavifglll~~alllg~~~fr~rra 38 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEHHHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 6308999999999999998884101259
No 3
>>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} (A:)
Probab=22.64 E-value=9 Score=18.90 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 9999999999988875402348864344431112644222
Q gi|254780159|r 54 CGLLMSLLIILSFTIVQDRRSSPRIDSDIETSEWNSDKNQ 93 (96)
Q Consensus 54 cgllmslliilsftivqdrrsspridsdietsewnsdknq 93 (96)
.|++.-.||..-++..+|||.-.+...+-..+.|+.+.|.
T Consensus 11 agivlIgLiwKll~~i~DrREyakFEkEr~~akw~~~eNP 50 (67)
T 1s4x_A 11 SGLVPRGSHMKLLITIHDRKEFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTTTTCSSSST
T ss_pred CCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6644377635899985308999999999987678877896
No 4
>>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* (A:684-741)
Probab=20.38 E-value=46 Score=14.90 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=22.4
Q ss_pred HHHHHHHH-HCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99888754-023488643444311126442224
Q gi|254780159|r 63 ILSFTIVQ-DRRSSPRIDSDIETSEWNSDKNQD 94 (96)
Q Consensus 63 ilsftivq-drrsspridsdietsewnsdknqd 94 (96)
-|.-.|.+ ..||+--|-+-|..++||++..|-
T Consensus 14 ~l~kvI~~PK~RSsrWiSTSvpe~~W~~~~a~~ 46 (58)
T 2vz8_A 14 QLRKVILDPKPRSKRWLSTSIPEAQWQGSLART 46 (58)
T ss_dssp HHHHHSCSCCBCCTTEECSSSCGGGTTSSSTTB
T ss_pred HHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 997400578899871898025776557642233
No 5
>>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, NMD, RNP domain, MIF4G domain; 1.95A {Homo sapiens} (B:118-248)
Probab=18.27 E-value=67 Score=13.99 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987413201300152699999999999999
Q gi|254780159|r 19 FIFVVLYTIVCASIIGNWQYSIHKRPALDMIASMICGLLMS 59 (96)
Q Consensus 19 fifvvlytivcasiignwqysihkrpaldmiasmicgllms 59 (96)
.||-.||.|++-..-+.-+.+--.-|---.--.|+|.||..
T Consensus 4 vIfdtLY~ii~fG~~~~~~~~~lDpPdd~FRIrLvctLL~t 44 (131)
T 1uw4_B 4 VIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDT 44 (131)
T ss_dssp HHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999986578766665556887641679999999999
No 6
>>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:686-743)
Probab=17.97 E-value=45 Score=14.99 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=21.9
Q ss_pred HHHHHHH-HCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9888754-023488643444311126442224
Q gi|254780159|r 64 LSFTIVQ-DRRSSPRIDSDIETSEWNSDKNQD 94 (96)
Q Consensus 64 lsftivq-drrsspridsdietsewnsdknqd 94 (96)
|.-.|.+ ..||+--|-+-|..++||++..|-
T Consensus 15 l~kvI~~PK~RSsrWiSTSvPe~~W~~~~a~~ 46 (58)
T 3hhd_A 15 LKKVIREPKPRSARWLSTSIPEAQWHSSLART 46 (58)
T ss_dssp HHHHCSSCCBCCTTBCCSSSCGGGTTSHHHHB
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99886068887750577635775346641123
No 7
>>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} (A:)
Probab=12.73 E-value=91 Score=13.25 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHCCCCHH
Q ss_conf 999999999874132013
Q gi|254780159|r 22 VVLYTIVCASIIGNWQYS 39 (96)
Q Consensus 22 vvlytivcasiignwqys 39 (96)
-+|-.+..-|..|||.-.
T Consensus 5 gilag~ay~smvgnwak~ 22 (26)
T 1emz_A 5 GVLAGIAYFSMVGNWAKX 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 888888999996038653
No 8
>>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:494-524,A:679-758)
Probab=11.52 E-value=90 Score=13.28 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=22.0
Q ss_pred HCCCCHHHHCCHHHHHHHHHHHHHH
Q ss_conf 4132013001526999999999999
Q gi|254780159|r 33 IGNWQYSIHKRPALDMIASMICGLL 57 (96)
Q Consensus 33 ignwqysihkrpaldmiasmicgll 57 (96)
-|.|.|..+..|..+.+|..|.|.-
T Consensus 30 fgtWdY~~~~~pd~~~VakEiNGy~ 54 (111)
T 1kqf_A 30 WGSWNYKQPHEPQSDEVAKENNGYA 54 (111)
T ss_dssp GGCCCCSSTTSCCHHHHHHHHHCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 4835778855566899998704865
No 9
>>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin,; NMR {Saccharomyces cerevisiae} (A:1-80)
Probab=10.78 E-value=82 Score=13.52 Aligned_cols=13 Identities=23% Similarity=0.306 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8768999999999
Q gi|254780159|r 13 FPVSAFFIFVVLY 25 (96)
Q Consensus 13 fpvsaffifvvly 25 (96)
=|.+|||+|.--+
T Consensus 23 rP~saf~lF~~~~ 35 (80)
T 1cg7_A 23 RALSAYMFFANEN 35 (80)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 9988999999999
No 10
>>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=10.27 E-value=87 Score=13.36 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=0.0
Q ss_pred CHHHHHHHH
Q ss_conf 768999999
Q gi|254780159|r 14 PVSAFFIFV 22 (96)
Q Consensus 14 pvsaffifv 22 (96)
|.+||++|.
T Consensus 11 P~say~lf~ 19 (92)
T 2cs1_A 11 PMSASALFV 19 (92)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
T ss_conf 987999999
Done!