RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780159|ref|YP_003064572.1| hypothetical protein
CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} (A:)
          Length = 67

 Score = 25.2 bits (55), Expect = 3.0
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 55 GLLMSLLIILSFTIVQDRRSSPRIDSDIETSEWNSDKN 92
          GL+     +     + DR+   + + +   ++W++  N
Sbjct: 12 GLVPRGSHMKLLITIHDRKEFAKFEEERARAKWDTANN 49


>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase,
          dimeric transmembrane domain, ATP-binding,
          glycoprotein, nucleotide-binding; NMR {Homo sapiens}
          PDB: 2k1l_A (A:)
          Length = 38

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 49 IASMICGLLMSLLIILSFTIVQDRRS 74
          I ++I GLL+   ++L   + + RR+
Sbjct: 13 IVAVIFGLLLGAALLLGILVFRSRRA 38


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 666,085
Number of extensions: 21647
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 12
Length of query: 96
Length of database: 4,956,049
Length adjustment: 56
Effective length of query: 40
Effective length of database: 3,062,969
Effective search space: 122518760
Effective search space used: 122518760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)