RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780159|ref|YP_003064572.1| hypothetical protein
CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 28.0 bits (62), Expect = 0.50
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 19/43 (44%)

Query: 47 DMIASMICGLLMSLLIILSFTIVQDRRSSPRIDSDIETSEWNS 89
          D++ ++ CGL           ++ D+     +D     SEW +
Sbjct: 42 DVVCAL-CGL-----------VLSDKL----VD---TRSEWRT 65


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.7 bits (60), Expect = 0.62
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 38 YSIHKRPALDMIASM 52
          Y+    PAL + A+M
Sbjct: 32 YADDSAPALAIKATM 46


>2knc_B Integrin beta-3; transmembrane signaling, coiled coil, protein
          structure, alternative splicing, calcium, cell
          adhesion; NMR {Homo sapiens}
          Length = 79

 Score = 25.9 bits (57), Expect = 2.6
 Identities = 9/48 (18%), Positives = 24/48 (50%)

Query: 45 ALDMIASMICGLLMSLLIILSFTIVQDRRSSPRIDSDIETSEWNSDKN 92
           L ++ +++   L +LLI      + DR+   + + +   ++W++  N
Sbjct: 14 LLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANN 61


>2o02_A 14-3-3 protein zeta/delta; 14-3-3, adapter protein, pathogen,
          protein binding/toxin complex; 1.50A {Homo sapiens}
          SCOP: a.118.7.1 PDB: 2v7d_A* 1qja_A* 1a37_A 1a38_A
          1a4o_A* 1ib1_A* 1qjb_A* 2wh0_A* 3cu8_A* 2bq0_A 2c23_A
          2b05_A* 2c63_A* 2c74_A* 1ywt_A* 1yz5_A
          Length = 230

 Score = 24.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 67 TIVQDRRSSPRIDSDIETSEWNSDKNQ 93
           +V  RRSS R+ S IE     ++K Q
Sbjct: 50 NVVGARRSSWRVVSSIEQKTEGAEKKQ 76


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 14/63 (22%)

Query: 18  FFIFVVLYTIVCASIIGNWQYSIHKRPALDMIASMICGLLMSLLIILSFTIVQDRRSSPR 77
              FV+    V A+ + +W               +ICGL   LL+      VQ+ ++   
Sbjct: 123 PIQFVMEGAAVLAAGLEDWVD-----------FGVICGL---LLLNAVVGFVQEFQAGSI 168

Query: 78  IDS 80
           +D 
Sbjct: 169 VDE 171


>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase,
          dimeric transmembrane domain, ATP-binding,
          glycoprotein, nucleotide-binding; NMR {Homo sapiens}
          PDB: 2k1l_A
          Length = 38

 Score = 24.0 bits (52), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 49 IASMICGLLMSLLIILSFTIVQDRRS 74
          I ++I GLL+   ++L   + + RR+
Sbjct: 13 IVAVIFGLLLGAALLLGILVFRSRRA 38


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.327    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 765,887
Number of extensions: 25710
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 17
Length of query: 96
Length of database: 5,693,230
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,190,102
Effective search space: 142463468
Effective search space used: 142463468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.6 bits)