RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780159|ref|YP_003064572.1| hypothetical protein
CLIBASIA_00210 [Candidatus Liberibacter asiaticus str. psy62]
         (96 letters)



>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
          cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
          Length = 220

 Score = 25.2 bits (55), Expect = 1.5
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 59 SLLIILSFTIVQDRRSSPRIDSDIETSEWNSDKNQ 93
           LL +     + D R+        +T + N+D+  
Sbjct: 47 HLLTLCIKHKISDYRTMTSQVLQEQTKQLNNDELV 81


>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 230

 Score = 24.4 bits (53), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 67 TIVQDRRSSPRIDSDIETSEWNSDKNQ 93
           +V  RRSS R+ S IE     ++K Q
Sbjct: 50 NVVGARRSSWRVVSSIEQKTEGAEKKQ 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,265
Number of extensions: 11416
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)