HHsearch alignment for GI: 254780160 and conserved domain: pfam08308
>pfam08308 PEGA PEGA domain. This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Probab=96.52 E-value=0.025 Score=33.02 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=38.0
Q ss_pred CCEEEEEECCCCCEEEECCCCEEECCCCCEEEEEEEECCCC-EEEEEEEEEECCCCEEEEEEEC
Q ss_conf 76089998389979742125212124487028999953882-4677799972885048999741
Q gi|254780160|r 225 ADTAWSILTASGDTVGESANASPSMVLSEGDYTVIARNKER-NYSREFSVLTGKSTIVEVLMRQ 287 (298)
Q Consensus 225 ~ga~~~i~~~~g~~vt~~~G~~~~~~L~~G~Y~v~a~~~~~-~y~~~ftV~~g~~~~veV~~~~ 287 (298)
T Consensus 11 ~gA~V~i---dg~~~G~--TP~~~~~l~~G~h~v~v~~~GY~~~~~~v~V~~g~~~~v~~~L~p 69 (71)
T pfam08308 11 SGATVYI---DGVYVGS--TPVTLSDLPAGTHTLRLEKEGYEDYSTTVTVTAGETVSVSLTLTP 69 (71)
T ss_pred CCCEEEE---CCEEECC--CCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCEEEEEEEEEE
T ss_conf 9999999---9999124--987413258966899999599850799999969998999899987