HHsearch alignment of GI: 254780160 and MMDB domain: 3kcp_A_155-252
>3kcp_A (A:155-252) Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 2b59_B
Probab=97.54 E-value=0.00024 Score=45.71 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=59.0
Q ss_pred CCCEEEEEEEECCCCCC------CCCEEEEEECCCCCEEEECCCCEEECCCCCEE--EEEEEECCCC-EEEEEEEEEECC
Q ss_conf 45238999983478863------27608999838997974212521212448702--8999953882-467779997288
Q gi|254780160|r 207 RAAKITFKLVSEMGGEA------VADTAWSILTASGDTVGESANASPSMVLSEGD--YTVIARNKER-NYSREFSVLTGK 277 (298)
Q Consensus 207 ~~~~~~~~~v~~~~G~~------l~ga~~~i~~~~g~~vt~~~G~~~~~~L~~G~--Y~v~a~~~~~-~y~~~ftV~~g~ 277 (298)
+...+.+++.+..++++ |++|.+.+.+.....++|.+|.|.+..+|+|. |++..+.-++ ...+.+....+
T Consensus 2 Q~~~i~G~V~d~~~~~~~~~~~~L~~a~v~~~~~~~gt~TD~~G~F~l~~~~~g~~~y~l~iS~iGy~~~~~~v~~~~~- 80 (98)
T 3kcp_A 2 EGYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIANVVVTG- 80 (98)
T ss_dssp SSEEEEEEEEESSCCCTTTHHHHHSCCEEEETTSSCEEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEEEEEESS-
T ss_pred CCEEEEEEECCCCEECCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCC-
T ss_conf 6338887871551012555424541279732575169996466258840358884478999706872578730310001-
Q ss_pred CCEEEEEEECH
Q ss_conf 50489997410
Q gi|254780160|r 278 STIVEVLMRQK 288 (298)
Q Consensus 278 ~~~veV~~~~~ 288 (298)
...+.+.|+.+
T Consensus 81 ~~~~~i~L~~~ 91 (98)
T 3kcp_A 81 DTSVSTSQAPI 91 (98)
T ss_dssp CEECCCSSSCE
T ss_pred CCCEEECCCCC
T ss_conf 01012101355