HHsearch results for GI: 254780160 and protein with PDBid: 1nkg_A

>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10

Probab=96.38  E-value=0.024  Score=31.81  Aligned_cols=75  Identities=15%  Similarity=0.097  Sum_probs=39.5

Q ss_pred             CCEEEEEEEECCCCCCCCCEEEEEECCCCC--EEEECCCCEEECCCCCEEEEEEEECCCC-EEEEEEEEEECCCCEEEEE
Q ss_conf             523899998347886327608999838997--9742125212124487028999953882-4677799972885048999
Q gi|254780160|r  208 AAKITFKLVSEMGGEAVADTAWSILTASGD--TVGESANASPSMVLSEGDYTVIARNKER-NYSREFSVLTGKSTIVEVL  284 (298)
Q Consensus       208 ~~~~~~~~v~~~~G~~l~ga~~~i~~~~g~--~vt~~~G~~~~~~L~~G~Y~v~a~~~~~-~y~~~ftV~~g~~~~veV~  284 (298)
                      .|.+..++.-.+.|.+   ..|.+.+.+-.  ..++++|.|.+.++.||+|++.+-.++. .++++++|.+|.+..+.+.
T Consensus       257 RG~V~G~~~l~~~g~~---~~~~~~~~~yQyWt~ad~~G~Fti~~VrpGtY~L~ay~~~~~~~~~~VtV~aG~~~~~~~~  333 (508)
T 1nkg_A          257 RGKVAGTASGADSSMD---WVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAGSTTTKNIS  333 (508)
T ss_dssp             CBEEEEEEESSCTTSC---EEEEEECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEEECTTCEEECCEE
T ss_pred             CCEEEEEEECCCCCCC---CEEEEECCCEEEEEEECCCCCEEECCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCEE
T ss_conf             6079999971478887---4788733660789990688857707702660689999786288986799927976531157


Q ss_pred             E
Q ss_conf             7
Q gi|254780160|r  285 M  285 (298)
Q Consensus       285 ~  285 (298)
                      .
T Consensus       334 ~  334 (508)
T 1nkg_A          334 G  334 (508)
T ss_dssp             C
T ss_pred             E
T ss_conf             0