HHSEARCH alignment of GI: 254780160 and SCOP domain: d1nkga1

Alignment

Probab=98.11  E-value=2.9e-06  Score=55.56  Aligned_cols=80  Identities=18%  Similarity=0.089  Sum_probs=56.2

Q ss_pred             CCEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCEEECCCCCEEEEEEEECCCCE-EEEEEEEEECCCCEEEEEEE
Q ss_conf             52389999834788632760899983899797421252121244870289999538824-67779997288504899974
Q gi|254780160|r  208 AAKITFKLVSEMGGEAVADTAWSILTASGDTVGESANASPSMVLSEGDYTVIARNKERN-YSREFSVLTGKSTIVEVLMR  286 (298)
Q Consensus       208 ~~~~~~~~v~~~~G~~l~ga~~~i~~~~g~~vt~~~G~~~~~~L~~G~Y~v~a~~~~~~-y~~~ftV~~g~~~~veV~~~  286 (298)
                      .|.+..++.+.. +.+++++.+.+........++.+|.|.+.+||||+|.+.++..++. .+++++|.+|++..+++.+.
T Consensus         7 ~GtvsG~V~~~~-~~~~~~v~v~~~~~~~~~~Td~~G~f~i~~l~~G~Y~l~v~~~Gy~~~~~~v~v~~g~t~~~ni~~s   85 (87)
T d1nkga1           7 RGKVAGTASGAD-SSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAGSTTTKNISGS   85 (87)
T ss_dssp             CBEEEEEEESSC-TTSCEEEEEECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEEECTTCEEECCEECC
T ss_pred             EEEEEEEEECCC-CCCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf             789999997998-8734579999488288999289886998266788789999992651000017983997799999830


Q ss_pred             CH
Q ss_conf             10
Q gi|254780160|r  287 QK  288 (298)
Q Consensus       287 ~~  288 (298)
                      .|
T Consensus        86 vk   87 (87)
T d1nkga1          86 VK   87 (87)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             39

SCOP domain information

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Rhamnogalacturonase B, RhgB, middle domain
domain: Rhamnogalacturonase B, RhgB, middle domain
species: Aspergillus aculeatus [TaxId: 5053]