HHSEARCH alignment of GI: 254780160 and SCOP domain: d1nkga1

Alignment

Probab=97.56  E-value=0.00017  Score=44.17  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEEEEEE-CCCCCEEEEEEECCCCE
Q ss_conf             9999986887753467599999538887620588982468566302267218999961-57775278998068613
Q gi|254780160|r   40 TCEARLTENSTSIDSGVSWHIFDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASF-GHVGVVKKITVSSKEKN  114 (298)
Q Consensus        40 ~l~a~~~~~~~~~~~G~~~~vy~~~~~~~g~~~~tt~~~G~~~~~~L~pG~Y~v~~s~-g~~~~~~~vtV~~~~~~  114 (298)
                      +++.+.++....++.++.  |+..  +  .....+|+++|.+.+.+|+||+|.|.+++ |+...++.++|..++..
T Consensus         9 tvsG~V~~~~~~~~~~v~--v~~~--~--~~~~~~Td~~G~f~i~~l~~G~Y~l~v~~~Gy~~~~~~v~v~~g~t~   78 (87)
T d1nkga1           9 KVAGTASGADSSMDWVVH--WYND--A--AQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSVTVSAGSTT   78 (87)
T ss_dssp             EEEEEEESSCTTSCEEEE--EECS--S--CEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEEEEEECTTCEE
T ss_pred             EEEEEEECCCCCCCCEEE--EEEC--C--CEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCEE
T ss_conf             999999799887345799--9948--8--28899928988699826678878999999265100001798399779

SCOP domain information

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Rhamnogalacturonase B, RhgB, middle domain
domain: Rhamnogalacturonase B, RhgB, middle domain
species: Aspergillus aculeatus [TaxId: 5053]