RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62] (298 letters) >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (C:359-648) Length = 290 Score = 28.3 bits (63), Expect = 1.2 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 5/37 (13%) Query: 80 GKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116 + SFG KI + KE+ + Sbjct: 48 SPCELAIEKTF-----SFGKTKKNVKINIFEKEEGKN 79 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (D:363-647) Length = 285 Score = 27.9 bits (62), Expect = 1.5 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 5/37 (13%) Query: 80 GKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116 + SFG KI + KE+ + Sbjct: 44 SPCELAIEKTF-----SFGKTKKNVKINIFEKEEGKN 75 >3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.90A {Pseudoalteromonas atlantica T6C} (A:1-260,A:452-497) Length = 306 Score = 27.4 bits (59), Expect = 2.4 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%) Query: 168 VRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAV 224 + + T +++ GK I +A+ ++ E+GGE Sbjct: 211 INGTGSVVGQTLCESPITKMITMTGSTVAGKQI----YKTSAEYMTPVMLELGGEQH 263 >3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* (A:89-192) Length = 104 Score = 26.9 bits (60), Expect = 3.0 Identities = 8/11 (72%), Positives = 11/11 (100%) Query: 78 IGGKVSFDLFP 88 IGG++SFD+FP Sbjct: 85 IGGQISFDVFP 95 >2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, HAD superfamily, jaecken disease; 2.09A {Homo sapiens} (A:90-193) Length = 104 Score = 26.9 bits (60), Expect = 3.2 Identities = 8/11 (72%), Positives = 11/11 (100%) Query: 78 IGGKVSFDLFP 88 IGG++SFD+FP Sbjct: 85 IGGQISFDVFP 95 >2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosylation; HET: MSE M1P; 1.75A {Homo sapiens} (A:98-202) Length = 105 Score = 26.9 bits (60), Expect = 3.7 Identities = 7/11 (63%), Positives = 9/11 (81%) Query: 78 IGGKVSFDLFP 88 GG +SFD+FP Sbjct: 86 RGGXISFDVFP 96 >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} (A:1-145,A:269-299) Length = 176 Score = 26.1 bits (57), Expect = 5.9 Identities = 7/37 (18%), Positives = 12/37 (32%) Query: 3 ISFSSYAKAENMHTTSTLLNNNISKGKGKRVVDAQRI 39 +SF + S KG+ + D R+ Sbjct: 54 LSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRM 90 >1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Length = 80 Score = 25.7 bits (57), Expect = 8.2 Identities = 11/34 (32%), Positives = 14/34 (41%) Query: 219 MGGEAVADTAWSILTASGDTVGESANASPSMVLS 252 E + IL +G +V AN P VLS Sbjct: 44 YATEVSNMSRAQILQQAGTSVLAQANQVPQNVLS 77 >1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Length = 55 Score = 25.3 bits (56), Expect = 8.6 Identities = 11/34 (32%), Positives = 14/34 (41%) Query: 219 MGGEAVADTAWSILTASGDTVGESANASPSMVLS 252 E T + I SG + ANA P +VL Sbjct: 19 FAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQ 52 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.313 0.129 0.353 Gapped Lambda K H 0.267 0.0380 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,071,611 Number of extensions: 87470 Number of successful extensions: 307 Number of sequences better than 10.0: 1 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 17 Length of query: 298 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 210 Effective length of database: 1,981,209 Effective search space: 416053890 Effective search space used: 416053890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 54 (25.5 bits)