RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780160|ref|YP_003064573.1| hypothetical protein
CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (C:359-648)
          Length = 290

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 5/37 (13%)

Query: 80  GKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116
                 +         SFG      KI +  KE+ + 
Sbjct: 48  SPCELAIEKTF-----SFGKTKKNVKINIFEKEEGKN 79


>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (D:363-647)
          Length = 285

 Score = 27.9 bits (62), Expect = 1.5
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 5/37 (13%)

Query: 80  GKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116
                 +         SFG      KI +  KE+ + 
Sbjct: 44  SPCELAIEKTF-----SFGKTKKNVKINIFEKEEGKN 75


>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2,
           protein structure initiative; 1.90A {Pseudoalteromonas
           atlantica T6C} (A:1-260,A:452-497)
          Length = 306

 Score = 27.4 bits (59), Expect = 2.4
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 168 VRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAV 224
           +    +    T        +++       GK I       +A+    ++ E+GGE  
Sbjct: 211 INGTGSVVGQTLCESPITKMITMTGSTVAGKQI----YKTSAEYMTPVMLELGGEQH 263


>3f9r_A Phosphomannomutase; trypanosome glycobiology structural
          genomics, isomerase, structural genomics consortium,
          SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
          (A:89-192)
          Length = 104

 Score = 26.9 bits (60), Expect = 3.0
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 78 IGGKVSFDLFP 88
          IGG++SFD+FP
Sbjct: 85 IGGQISFDVFP 95


>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504,
          BC008310, phosphatase, PFAM PF03332, HAD superfamily,
          jaecken disease; 2.09A {Homo sapiens} (A:90-193)
          Length = 104

 Score = 26.9 bits (60), Expect = 3.2
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 78 IGGKVSFDLFP 88
          IGG++SFD+FP
Sbjct: 85 IGGQISFDVFP 95


>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product
          complex, protein glycosylation; HET: MSE M1P; 1.75A
          {Homo sapiens} (A:98-202)
          Length = 105

 Score = 26.9 bits (60), Expect = 3.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 78 IGGKVSFDLFP 88
           GG +SFD+FP
Sbjct: 86 RGGXISFDVFP 96


>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus
          acidocaldarius} (A:1-145,A:269-299)
          Length = 176

 Score = 26.1 bits (57), Expect = 5.9
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 3  ISFSSYAKAENMHTTSTLLNNNISKGKGKRVVDAQRI 39
          +SF                  + S  KG+ + D  R+
Sbjct: 54 LSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRM 90


>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron
           microscopy, helical reconstruction, structural protein;
           4.00A {Salmonella typhimurium} (A:1-40,A:455-494)
          Length = 80

 Score = 25.7 bits (57), Expect = 8.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 219 MGGEAVADTAWSILTASGDTVGESANASPSMVLS 252
              E    +   IL  +G +V   AN  P  VLS
Sbjct: 44  YATEVSNMSRAQILQQAGTSVLAQANQVPQNVLS 77


>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone,
           FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:)
          Length = 55

 Score = 25.3 bits (56), Expect = 8.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 219 MGGEAVADTAWSILTASGDTVGESANASPSMVLS 252
              E    T + I   SG  +   ANA P +VL 
Sbjct: 19  FAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQ 52


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,071,611
Number of extensions: 87470
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 17
Length of query: 298
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 210
Effective length of database: 1,981,209
Effective search space: 416053890
Effective search space used: 416053890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.5 bits)