RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780160|ref|YP_003064573.1| hypothetical protein
CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 59/362 (16%), Positives = 108/362 (29%), Gaps = 161/362 (44%)

Query: 4   SF-SSYAKAENMHT-TSTLLNNN-ISKGKGKRVV----DAQRITCEARLTENSTSIDSGV 56
            F + Y +  ++H   + LL  N  +  K K ++     A+ +  +    + S S     
Sbjct: 90  EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA-KRPFDKKSNSA---- 144

Query: 57  SWHIFDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116
              +F ++      L     I GG+ + D    DY                   +E    
Sbjct: 145 ---LFRAVGEGNAQLVA---IFGGQGNTD----DYF------------------EE---- 172

Query: 117 QVFILNAGGIR-LYSIYKPGSPIVDD----------EL------TFSIYS---------- 149
                    +R LY  Y     +V D          EL         +++          
Sbjct: 173 ---------LRDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220

Query: 150 NPNH---KALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIID----- 201
           NP++   K  L++  + S  L+ +     Q+  HY     + + ++   PG++       
Sbjct: 221 NPSNTPDKDYLLSIPI-SCPLIGVI----QLA-HY----VVTAKLLGFTPGELRSYLKGA 270

Query: 202 -------VTIQNRAAKITFKLVSEMGGEAVADTAW-SILTASGDTV------G-ESANAS 246
                  VT    A  I           A  D+ W S   +    +      G     A 
Sbjct: 271 TGHSQGLVT----AVAI-----------AETDS-WESFFVSVRKAITVLFFIGVRCYEAY 314

Query: 247 PSMVLSEGDYTVIA---RNKE---------RNYSREFSVLTGKSTIVEVLMRQKRMDKNG 294
           P+  L     +++     N E          N ++E           +V   Q  ++K  
Sbjct: 315 PNTSLPP---SILEDSLENNEGVPSPMLSISNLTQE-----------QV---QDYVNKTN 357

Query: 295 QH 296
            H
Sbjct: 358 SH 359



 Score = 29.1 bits (65), Expect = 1.2
 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 48/140 (34%)

Query: 81  KVSFDL-F-PGDYLISASFGH----VGVVKKITVSSKEKNQKQVFILNAG--GIRLYSIY 132
           K+ F   F P    +++ F H    V     I     +   K     NA    I +Y  +
Sbjct: 413 KLKFSNRFLP----VASPF-HSHLLVPASDLI----NKDLVKNNVSFNAKDIQIPVYDTF 463

Query: 133 ------KPGSPIVDDELTFSIYSNPNH--KAL-------------------LITDKVRSG 165
                      I +  +   I   P                          ++T + + G
Sbjct: 464 DGSDLRVLSGSISER-IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522

Query: 166 TLVRL---GTNNYQITSHYG 182
           T VR+   GT +      YG
Sbjct: 523 TGVRVIVAGTLDINPDDDYG 542


>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic filament,
           structural protein; 3.30A {Oryctolagus cuniculus}
          Length = 570

 Score = 30.4 bits (66), Expect = 0.58
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 132 YKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTV 191
           +K    +   +  + I S     ++ I +   +     +G    + ++  G    + S  
Sbjct: 419 HKDKRELRSGK-KYKIMSENFLTSIHILNVDSA----DIGEYQCKASNDVGSDTCVGSIT 473

Query: 192 VKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAVADTAW-----SILTASGDTVGESANAS 246
           +K  P  +  ++  +       +L + + G      AW      I+  S +     +   
Sbjct: 474 LKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533

Query: 247 PSMVLS------EGDYTVIARNK 263
            ++  S       G YT   +N+
Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNE 556


>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy,
           FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR
           {Mus musculus}
          Length = 155

 Score = 28.7 bits (64), Expect = 1.6
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 166 TLVRLGTNNYQITSHYGKY------NAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEM 219
           T V+L  +   + S YGKY        +V     + P +  +   Q+        L++  
Sbjct: 65  TAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDG----KMALLASN 120

Query: 220 GGEAVADTAWSILTASGDTVGES 242
                 + A   + A   T GE 
Sbjct: 121 SCFIRCNEAGD-IEAKNKTAGEE 142


>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
            enzyme, substrate channeling, amidotransferase,
            flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
            {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
            1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
          Length = 1520

 Score = 28.7 bits (64), Expect = 1.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 198  KIIDVTIQNRAAKITFKLVSEMGGEAVA 225
             I D+   N  A+++ KLV+E+G   +A
Sbjct: 1018 LIYDLHQINPEAQVSVKLVAEIGIGTIA 1045


>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta
          sandwich, duplication of A half-domain; 2.01A
          {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
          Length = 221

 Score = 27.6 bits (61), Expect = 3.6
 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 13 NMHTTSTLLNNNISKGKGKRVVDAQR------ITCEARLTENSTSIDSGVSW--HIFDSI 64
          ++ T +    +NI  G    +   QR      +       ++ + I++GV +  H+    
Sbjct: 11 DLGTENLYFQSNIGSGSNAMIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLF 70

Query: 65 S 65
          +
Sbjct: 71 T 71


>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
           type-III, beta-N-acetylglucosaminidase, cohesin,
           hydrolase; 1.80A {Clostridium perfringens}
          Length = 238

 Score = 27.2 bits (59), Expect = 4.8
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 121 LNAGGIRLYSIYKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSH 180
           +  G +R+      G P+   E+   +      K       V + ++       ++I   
Sbjct: 76  IEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGT 135

Query: 181 YGKYNAIVSTVVKVEPGKIIDVTIQNRAAK---ITFKLVSEMGGEAVADTAWSILTASGD 237
               N I  T  ++    + D        K   +T+       G         IL   G 
Sbjct: 136 EKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-----LEGYILYKDGK 190

Query: 238 TVGESANASPSMV---LSEG---DYTVIARNK--ERNYSREFSVLTGK 277
            V E      S     L+     ++ + A+    E +     ++ T +
Sbjct: 191 KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238


>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
           peptidase, transthyretin-like domain, hormone
           processing, peptide modification; HET: NAG; 2.10A {Homo
           sapiens}
          Length = 439

 Score = 26.3 bits (57), Expect = 7.6
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 80  GKVSFDLFPGDYLISASF-GHVGVVKKITVSSKEKNQKQVFILNAGGIRL 128
           G     L PG Y +SA+  G+      +TV   E      F L     ++
Sbjct: 355 GDYFRLLLPGIYTVSATAPGYDPETVTVTVGPAE-PTLVNFHLKRSIPQV 403


>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
           1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
           2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
          Length = 738

 Score = 26.5 bits (58), Expect = 8.1
 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 3/119 (2%)

Query: 104 KKITVSSKEKNQKQVFILNAGGIRLYSIYKPGSPIVDD-ELTFSIYSNPNHKALLITDKV 162
            +  ++S + N    F +++ G   Y +      ++    L   +    N +        
Sbjct: 21  MQQKLTSPDNNLVMTFQVDSKGAPTYELTYKNKVVIKPSTLGLELKKEDNTRTDFDWVDR 80

Query: 163 RSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGG 221
           R  T +   TN Y          A      +   G+  +  I+N   ++   L   M  
Sbjct: 81  RDLTKLDSKTNLYDGFEVKDTQTATFDETWQPVWGE--EKEIRNHYNELAVTLYQPMND 137


>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron
           transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A
           {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2
           f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
          Length = 289

 Score = 26.2 bits (58), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 230 SILTASGDTVGESANASPSMVLSEGD 255
           SI T SG TV ++  A P +++SEG 
Sbjct: 198 SIQTDSGKTVVDTIPAGPELIVSEGQ 223


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,378,483
Number of extensions: 104911
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 17
Length of query: 298
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 206
Effective length of database: 3,462,782
Effective search space: 713333092
Effective search space used: 713333092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.8 bits)