RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62] (298 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 54.2 bits (130), Expect = 4e-08 Identities = 59/362 (16%), Positives = 108/362 (29%), Gaps = 161/362 (44%) Query: 4 SF-SSYAKAENMHT-TSTLLNNN-ISKGKGKRVV----DAQRITCEARLTENSTSIDSGV 56 F + Y + ++H + LL N + K K ++ A+ + + + S S Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA-KRPFDKKSNSA---- 144 Query: 57 SWHIFDSISNKKNTLSTTKKIIGGKVSFDLFPGDYLISASFGHVGVVKKITVSSKEKNQK 116 +F ++ L I GG+ + D DY +E Sbjct: 145 ---LFRAVGEGNAQLVA---IFGGQGNTD----DYF------------------EE---- 172 Query: 117 QVFILNAGGIR-LYSIYKPGSPIVDD----------EL------TFSIYS---------- 149 +R LY Y +V D EL +++ Sbjct: 173 ---------LRDLYQTYH---VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220 Query: 150 NPNH---KALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIID----- 201 NP++ K L++ + S L+ + Q+ HY + + ++ PG++ Sbjct: 221 NPSNTPDKDYLLSIPI-SCPLIGVI----QLA-HY----VVTAKLLGFTPGELRSYLKGA 270 Query: 202 -------VTIQNRAAKITFKLVSEMGGEAVADTAW-SILTASGDTV------G-ESANAS 246 VT A I A D+ W S + + G A Sbjct: 271 TGHSQGLVT----AVAI-----------AETDS-WESFFVSVRKAITVLFFIGVRCYEAY 314 Query: 247 PSMVLSEGDYTVIA---RNKE---------RNYSREFSVLTGKSTIVEVLMRQKRMDKNG 294 P+ L +++ N E N ++E +V Q ++K Sbjct: 315 PNTSLPP---SILEDSLENNEGVPSPMLSISNLTQE-----------QV---QDYVNKTN 357 Query: 295 QH 296 H Sbjct: 358 SH 359 Score = 29.1 bits (65), Expect = 1.2 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 48/140 (34%) Query: 81 KVSFDL-F-PGDYLISASFGH----VGVVKKITVSSKEKNQKQVFILNAG--GIRLYSIY 132 K+ F F P +++ F H V I + K NA I +Y + Sbjct: 413 KLKFSNRFLP----VASPF-HSHLLVPASDLI----NKDLVKNNVSFNAKDIQIPVYDTF 463 Query: 133 ------KPGSPIVDDELTFSIYSNPNH--KAL-------------------LITDKVRSG 165 I + + I P ++T + + G Sbjct: 464 DGSDLRVLSGSISER-IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522 Query: 166 TLVRL---GTNNYQITSHYG 182 T VR+ GT + YG Sbjct: 523 TGVRVIVAGTLDINPDDDYG 542 >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic filament, structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 Score = 30.4 bits (66), Expect = 0.58 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 16/143 (11%) Query: 132 YKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSHYGKYNAIVSTV 191 +K + + + I S ++ I + + +G + ++ G + S Sbjct: 419 HKDKRELRSGK-KYKIMSENFLTSIHILNVDSA----DIGEYQCKASNDVGSDTCVGSIT 473 Query: 192 VKVEPGKIIDVTIQNRAAKITFKLVSEMGGEAVADTAW-----SILTASGDTVGESANAS 246 +K P + ++ + +L + + G AW I+ S + + Sbjct: 474 LKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533 Query: 247 PSMVLS------EGDYTVIARNK 263 ++ S G YT +N+ Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNE 556 >2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155 Score = 28.7 bits (64), Expect = 1.6 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 166 TLVRLGTNNYQITSHYGKY------NAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEM 219 T V+L + + S YGKY +V + P + + Q+ L++ Sbjct: 65 TAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDG----KMALLASN 120 Query: 220 GGEAVADTAWSILTASGDTVGES 242 + A + A T GE Sbjct: 121 SCFIRCNEAGD-IEAKNKTAGEE 142 >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Length = 1520 Score = 28.7 bits (64), Expect = 1.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 198 KIIDVTIQNRAAKITFKLVSEMGGEAVA 225 I D+ N A+++ KLV+E+G +A Sbjct: 1018 LIYDLHQINPEAQVSVKLVAEIGIGTIA 1045 >2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9 Length = 221 Score = 27.6 bits (61), Expect = 3.6 Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 8/61 (13%) Query: 13 NMHTTSTLLNNNISKGKGKRVVDAQR------ITCEARLTENSTSIDSGVSW--HIFDSI 64 ++ T + +NI G + QR + ++ + I++GV + H+ Sbjct: 11 DLGTENLYFQSNIGSGSNAMIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLF 70 Query: 65 S 65 + Sbjct: 71 T 71 >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 Score = 27.2 bits (59), Expect = 4.8 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 16/168 (9%) Query: 121 LNAGGIRLYSIYKPGSPIVDDELTFSIYSNPNHKALLITDKVRSGTLVRLGTNNYQITSH 180 + G +R+ G P+ E+ + K V + ++ ++I Sbjct: 76 IEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGT 135 Query: 181 YGKYNAIVSTVVKVEPGKIIDVTIQNRAAK---ITFKLVSEMGGEAVADTAWSILTASGD 237 N I T ++ + D K +T+ G IL G Sbjct: 136 EKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-----LEGYILYKDGK 190 Query: 238 TVGESANASPSMV---LSEG---DYTVIARNK--ERNYSREFSVLTGK 277 V E S L+ ++ + A+ E + ++ T + Sbjct: 191 KVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238 >2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, hormone processing, peptide modification; HET: NAG; 2.10A {Homo sapiens} Length = 439 Score = 26.3 bits (57), Expect = 7.6 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%) Query: 80 GKVSFDLFPGDYLISASF-GHVGVVKKITVSSKEKNQKQVFILNAGGIRL 128 G L PG Y +SA+ G+ +TV E F L ++ Sbjct: 355 GDYFRLLLPGIYTVSATAPGYDPETVTVTVGPAE-PTLVNFHLKRSIPQV 403 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Length = 738 Score = 26.5 bits (58), Expect = 8.1 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 3/119 (2%) Query: 104 KKITVSSKEKNQKQVFILNAGGIRLYSIYKPGSPIVDD-ELTFSIYSNPNHKALLITDKV 162 + ++S + N F +++ G Y + ++ L + N + Sbjct: 21 MQQKLTSPDNNLVMTFQVDSKGAPTYELTYKNKVVIKPSTLGLELKKEDNTRTDFDWVDR 80 Query: 163 RSGTLVRLGTNNYQITSHYGKYNAIVSTVVKVEPGKIIDVTIQNRAAKITFKLVSEMGG 221 R T + TN Y A + G+ + I+N ++ L M Sbjct: 81 RDLTKLDSKTNLYDGFEVKDTQTATFDETWQPVWGE--EKEIRNHYNELAVTLYQPMND 137 >1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C* Length = 289 Score = 26.2 bits (58), Expect = 9.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 230 SILTASGDTVGESANASPSMVLSEGD 255 SI T SG TV ++ A P +++SEG Sbjct: 198 SIQTDSGKTVVDTIPAGPELIVSEGQ 223 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.313 0.129 0.353 Gapped Lambda K H 0.267 0.0532 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,378,483 Number of extensions: 104911 Number of successful extensions: 307 Number of sequences better than 10.0: 1 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 17 Length of query: 298 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 206 Effective length of database: 3,462,782 Effective search space: 713333092 Effective search space used: 713333092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 56 (25.8 bits)