RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62] (298 letters) >d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]} Length = 210 Score = 26.3 bits (58), Expect = 3.7 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 254 GDYTVIARNKERNYSREFSVLTGKST-IVEVLMRQKRM 290 GD V+A+ R F+ K+T + E+L R KR Sbjct: 146 GDLQVLAQKVARTLPTSFNYGAIKATRVTELLYRMKRA 183 >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 Score = 26.1 bits (56), Expect = 4.2 Identities = 6/31 (19%), Positives = 15/31 (48%) Query: 177 ITSHYGKYNAIVSTVVKVEPGKIIDVTIQNR 207 T + +V + ++ +I++T +NR Sbjct: 135 ATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.313 0.129 0.353 Gapped Lambda K H 0.267 0.0566 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,031,097 Number of extensions: 45896 Number of successful extensions: 114 Number of sequences better than 10.0: 1 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 7 Length of query: 298 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,240,546 Effective search space: 264236298 Effective search space used: 264236298 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 53 (24.6 bits)