RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780160|ref|YP_003064573.1| hypothetical protein
CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus)
           coat proteins {FMDV (Foot-and-mouth disease virus),
           strain bfs, 1860 [TaxId: 12110]}
          Length = 210

 Score = 26.3 bits (58), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 254 GDYTVIARNKERNYSREFSVLTGKST-IVEVLMRQKRM 290
           GD  V+A+   R     F+    K+T + E+L R KR 
Sbjct: 146 GDLQVLAQKVARTLPTSFNYGAIKATRVTELLYRMKRA 183


>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical  kinase-like protein
           Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
          Length = 178

 Score = 26.1 bits (56), Expect = 4.2
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 177 ITSHYGKYNAIVSTVVKVEPGKIIDVTIQNR 207
            T      + +V  + ++    +I++T +NR
Sbjct: 135 ATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,031,097
Number of extensions: 45896
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 7
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)