HHsearch alignment for GI: 254780161 and conserved domain: cd00867
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. The head-to-head (HH) IPPS catalyze t
Probab=99.72 E-value=1e-15 Score=125.54 Aligned_cols=192 Identities=10% Similarity=-0.014 Sum_probs=147.2
Q ss_pred CHHHHHHHCCH----------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 38799885998----------88068999999999997760367882589999999-99999977401789868989999
Q gi|254780161|r 34 DRYLACLLSPP----------LYRISLSFLYYFHTELMRVRDTARNPITRDMRLQW-WKDIFESSTKGLIAESISPFSVE 102 (299)
Q Consensus 34 ~~y~a~~~lP~----------~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~-w~~~l~~~~~~~~~~~~~Pv~~a 102 (299)
T Consensus 1 ~Rp~l~~~~~~~~g~~~~~~~~~a~avElih~~slihDDi~D~~~~RRg~~t~~~~~~g~~~ail-~-----gd~l~~~a 74 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALAIL-A-----GDYLLARA 74 (236)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHH-H-----HHHHHHHH
T ss_conf 96599999999839888899999999999999999977533699777898656888605578999-7-----20999999
Q ss_pred HHHHHH-----HCCCCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHH-HHHHHHHHHHHHCCCCC-----HHHHHHH
Q ss_conf 999998-----618998999999999985305888--8998999998644-33799999998403430-----3455766
Q gi|254780161|r 103 LLSIVR-----QYDLPNQYFLDMIEAHFFDSYNDS--IFDCKQFEHYAFR-ISSRLIHLATMILDSER-----YSASLRV 169 (299)
Q Consensus 103 L~~~~~-----~~~l~~~~l~~lid~~~~Dl~~~~--~~t~~~L~~Y~~~-~ag~vg~l~~~i~~~~~-----~~~~~~~ 169 (299)
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~l~~Gq~~Dl~~~~~~~~t~~~~~~~~~~KTa~l~~~~~~~~a~~~~~~~~~~~~l~~~ 154 (236)
T cd00867 75 FQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDY 154 (236)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99986238789999999999999998899976047888999999999998869999999999999819899999999999
Q ss_pred HHHHHHHHHHHHHHHCCHHHH----------HCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999998998872247876----------3488734678999639997785246899879999999999999999999
Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHY----------HRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKA 239 (299)
Q Consensus 170 a~~lG~A~ql~niLRdi~~d~----------~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a 239 (299)
T Consensus 155 g~~lG~AfQi~DDllD~~~d~~~~gk~~~D~~~gk~tlp~~~~----------------------~~~~~~~a~~~~~~~ 212 (236)
T cd00867 155 GRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA----------------------RERAAEYAEEAYAAL 212 (236)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCHHHHHHH----------------------HHHHHHHHHHHHHHH
T ss_conf 9999999999999988408967769562568769720999999----------------------999999999999999
Q ss_pred HHHHHHCCHHHHHH
Q ss_conf 96445289999999
Q gi|254780161|r 240 REEMRYILPDVFPA 253 (299)
Q Consensus 240 ~~~~~~lp~~~r~~ 253 (299)
T Consensus 213 ~~~~~~~~~~~~~l 226 (236)
T cd00867 213 EALPPSLPRARRAL 226 (236)
T ss_pred HHHHHHCCHHHHHH
T ss_conf 98666267868999