HHsearch alignment for GI: 254780161 and conserved domain: pfam00494
>pfam00494 SQS_PSY Squalene/phytoene synthase.
Probab=100.00 E-value=0 Score=405.14 Aligned_cols=258 Identities=24% Similarity=0.409 Sum_probs=240.3
Q ss_pred HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHH
Q ss_conf 98528138799885998880689999999999977603678825899999999999997740-17898689899999999
Q gi|254780161|r 28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTK-GLIAESISPFSVELLSI 106 (299)
Q Consensus 28 lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~-~~~~~~~~Pv~~aL~~~ 106 (299)
T Consensus 1 lr~~s~sf~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pv~~al~~~ 80 (262)
T pfam00494 1 LRKHSRSFYLASLLLPPELRRAVAALYAFCREADDIVDEVSDPLIGRARLDWWRDALDAAFAGRRLGPSTHPVLRALADT 80 (262)
T ss_pred CCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98766306999987899999999999999999988745589876999999999999878888871799988999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9861899899999999998530588889989999986443379999999840343034-557668899999989988722
Q gi|254780161|r 107 VRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYS-ASLRVIKYAGIAQFIGQLICQ 185 (299)
Q Consensus 107 ~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~-~~~~~a~~lG~A~ql~niLRd 185 (299)
T Consensus 81 ~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~Vg~l~~~i~g~~~~~~~~~~~A~~lG~AlQltNilRD 160 (262)
T pfam00494 81 VRRYDLPREPFLELIDGMEMDLEKDRYETLAELEEYCYRVAGVVGLLLLRLLGVRDDAEAADEAARHLGLALQLTNILRD 160 (262)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98839988999999999998736799999999999998816899999999957789458899999999999999999974
Q ss_pred CHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHH-HHHHHHHHHHH
Q ss_conf 4787634887346789996399977852468998799999999999999999999644528-999999-99999999999
Q gi|254780161|r 186 LPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI-LPDVFP-AFIPVSITESV 263 (299)
Q Consensus 186 i~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l-p~~~r~-~~l~~~~~~~~ 263 (299)
T Consensus 161 i~eD~~~gR~YLP~~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~l~p~~~r~~~~~~~~~y~~i 240 (262)
T pfam00494 161 VGEDARRGRVYLPADWLARFGVSPEDLLRGRASPELRALIAELAARARAHLAEARALLALLPPRRARLAVLLAAALYRAI 240 (262)
T ss_pred HHHHHCCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 69998399277888999885999999736679999999999999999999999999885389876789999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 9999968887245898689667
Q gi|254780161|r 264 LKHAQNHGFKIVSHSHTPNQLV 285 (299)
Q Consensus 264 L~~l~~~~~~v~~~~~~~~~~~ 285 (299)
T Consensus 241 l~~i~~~~~~~~~~R~~l~~~r 262 (262)
T pfam00494 241 LDRLEAAGYDVLRRRVKLSRLR 262 (262)
T ss_pred HHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999867998788998789999