HHsearch alignment for GI: 254780161 and conserved domain: pfam00494

>pfam00494 SQS_PSY Squalene/phytoene synthase.
Probab=100.00  E-value=0  Score=405.14  Aligned_cols=258  Identities=24%  Similarity=0.409  Sum_probs=240.3

Q ss_pred             HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHH
Q ss_conf             98528138799885998880689999999999977603678825899999999999997740-17898689899999999
Q gi|254780161|r   28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTK-GLIAESISPFSVELLSI  106 (299)
Q Consensus        28 lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~-~~~~~~~~Pv~~aL~~~  106 (299)
T Consensus         1 lr~~s~sf~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pv~~al~~~   80 (262)
T pfam00494         1 LRKHSRSFYLASLLLPPELRRAVAALYAFCREADDIVDEVSDPLIGRARLDWWRDALDAAFAGRRLGPSTHPVLRALADT   80 (262)
T ss_pred             CCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             98766306999987899999999999999999988745589876999999999999878888871799988999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9861899899999999998530588889989999986443379999999840343034-557668899999989988722
Q gi|254780161|r  107 VRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYS-ASLRVIKYAGIAQFIGQLICQ  185 (299)
Q Consensus       107 ~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~-~~~~~a~~lG~A~ql~niLRd  185 (299)
T Consensus        81 ~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~Vg~l~~~i~g~~~~~~~~~~~A~~lG~AlQltNilRD  160 (262)
T pfam00494        81 VRRYDLPREPFLELIDGMEMDLEKDRYETLAELEEYCYRVAGVVGLLLLRLLGVRDDAEAADEAARHLGLALQLTNILRD  160 (262)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98839988999999999998736799999999999998816899999999957789458899999999999999999974


Q ss_pred             CHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHH-HHHHHHHHHHH
Q ss_conf             4787634887346789996399977852468998799999999999999999999644528-999999-99999999999
Q gi|254780161|r  186 LPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI-LPDVFP-AFIPVSITESV  263 (299)
Q Consensus       186 i~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l-p~~~r~-~~l~~~~~~~~  263 (299)
T Consensus       161 i~eD~~~gR~YLP~~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~l~p~~~r~~~~~~~~~y~~i  240 (262)
T pfam00494       161 VGEDARRGRVYLPADWLARFGVSPEDLLRGRASPELRALIAELAARARAHLAEARALLALLPPRRARLAVLLAAALYRAI  240 (262)
T ss_pred             HHHHHCCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             69998399277888999885999999736679999999999999999999999999885389876789999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             9999968887245898689667
Q gi|254780161|r  264 LKHAQNHGFKIVSHSHTPNQLV  285 (299)
Q Consensus       264 L~~l~~~~~~v~~~~~~~~~~~  285 (299)
T Consensus       241 l~~i~~~~~~~~~~R~~l~~~r  262 (262)
T pfam00494       241 LDRLEAAGYDVLRRRVKLSRLR  262 (262)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCC
T ss_conf             9999867998788998789999