HHsearch alignment of GI: 254780161 and MMDB domain: 1wy0_A_
>1wy0_A (A:) Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3}
Probab=91.16 E-value=0.98 Score=23.61 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999985305--8888998999998644337999999984---03430---345576688999999899887224
Q gi|254780161|r 115 QYFLDMIEAHFFDSY--NDSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL 186 (299)
Q Consensus 115 ~~l~~lid~~~~Dl~--~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi 186 (299)
.....+..|.-.|+. .....+.+++..-++.-.|++..+++.+ +++.+ .........++|.++|+.+=++|+
T Consensus 144 ~~~~~~~~Gq~~dl~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~~~~~~~~~~~~~~~~g~~lG~afQi~DD~~d~ 223 (342)
T 1wy0_A 144 KASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDL 223 (342)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 67645522520333332156787999999999888999999986140001599999999999999999999998887531
Q ss_pred -----------HHHHHCCCCCCCHHHHHHCCCCH-HH-HH---CCCCC----------------HHHHH------HHHHH
Q ss_conf -----------78763488734678999639997-78-52---46899----------------87999------99999
Q gi|254780161|r 187 -----------PIHYHRGQLYFPLDILGAVGLDR-ES-FL---SGQNS----------------DRISL------AIKIF 228 (299)
Q Consensus 187 -----------~~d~~~gr~yLP~~~l~~~gv~~-e~-l~---~~~~~----------------~~~~~------~~~~~ 228 (299)
..|+..|+..+|.-..-+..-.. .+ +. ..... ..+++ .+...
T Consensus 224 ~~~~~~~gK~~~~Dl~~gk~T~p~~~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 303 (342)
T 1wy0_A 224 IADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA 303 (342)
T ss_dssp HSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 48877608333456764101589999999711778999999971424206655444420389999999999986989999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9999999999996445289999
Q gi|254780161|r 229 AELGLKYLFKAREEMRYILPDV 250 (299)
Q Consensus 229 ~~~A~~~l~~a~~~~~~lp~~~ 250 (299)
...++.+.++|.+.+..+|...
T Consensus 304 ~~~~~~~~~~a~~~l~~l~~~~ 325 (342)
T 1wy0_A 304 AEIAKDMIKKANEALRILPKSK 325 (342)
T ss_dssp HHHHHHHHHHHHTTGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999999999986699978