HHsearch alignment of GI: 254780161 and MMDB domain: 2q80_A_109-281
>2q80_A (A:109-281) Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
Probab=96.65 E-value=0.042 Score=32.86 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 9999999999853058--8-88998999998644337999999984---03430345576688999999899887224--
Q gi|254780161|r 115 QYFLDMIEAHFFDSYN--D-SIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL-- 186 (299)
Q Consensus 115 ~~l~~lid~~~~Dl~~--~-~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi-- 186 (299)
..+.++..|...|+.. + .-.|++++..-+..-.|++..+++.+ ++ ...+.......++|.|+|+.|=+.|+
T Consensus 10 ~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~~~~KTg~lf~~~~~~~a~la-~~~~~l~~~g~~lG~afQi~DD~~d~~~ 88 (173)
T 2q80_A 10 RQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFS-DYKEDLKPLLNTLGLFFQIRDDYANLHS 88 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCSCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 101111010035665402345576999999998603102320003544212-2003789999988999998766442004
Q ss_pred ---------HHHHHCCCCCCCHHHHHHCCCCH-HHH---HCCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------78763488734678999639997-785---24689987999----------99999999999999999644
Q gi|254780161|r 187 ---------PIHYHRGQLYFPLDILGAVGLDR-ESF---LSGQNSDRISL----------AIKIFAELGLKYLFKAREEM 243 (299)
Q Consensus 187 ---------~~d~~~gr~yLP~~~l~~~gv~~-e~l---~~~~~~~~~~~----------~~~~~~~~A~~~l~~a~~~~ 243 (299)
+.|+..|+..+|.-..-+..-.. +.+ ..+..++.-.. ++......++.+...|...+
T Consensus 89 ~~~~~gK~~g~Dl~~gk~T~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~L 168 (173)
T 2q80_A 89 KEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQI 168 (173)
T ss_dssp C------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 40003555332020488769999999845247999999865569999999999999985989999999999999999999
Q ss_pred HHC
Q ss_conf 528
Q gi|254780161|r 244 RYI 246 (299)
Q Consensus 244 ~~l 246 (299)
..+
T Consensus 169 ~~l 171 (173)
T 2q80_A 169 DAR 171 (173)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 819