HHsearch alignment of GI: 254780161 and MMDB domain: 2q80_A_109-281

>2q80_A (A:109-281) Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
Probab=96.65  E-value=0.042  Score=32.86  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf             9999999999853058--8-88998999998644337999999984---03430345576688999999899887224--
Q gi|254780161|r  115 QYFLDMIEAHFFDSYN--D-SIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL--  186 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~--~-~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi--  186 (299)
                      ..+.++..|...|+..  + .-.|++++..-+..-.|++..+++.+   ++ ...+.......++|.|+|+.|=+.|+  
T Consensus        10 ~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~~~~KTg~lf~~~~~~~a~la-~~~~~l~~~g~~lG~afQi~DD~~d~~~   88 (173)
T 2q80_A           10 RQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFS-DYKEDLKPLLNTLGLFFQIRDDYANLHS   88 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCSCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             101111010035665402345576999999998603102320003544212-2003789999988999998766442004


Q ss_pred             ---------HHHHHCCCCCCCHHHHHHCCCCH-HHH---HCCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------78763488734678999639997-785---24689987999----------99999999999999999644
Q gi|254780161|r  187 ---------PIHYHRGQLYFPLDILGAVGLDR-ESF---LSGQNSDRISL----------AIKIFAELGLKYLFKAREEM  243 (299)
Q Consensus       187 ---------~~d~~~gr~yLP~~~l~~~gv~~-e~l---~~~~~~~~~~~----------~~~~~~~~A~~~l~~a~~~~  243 (299)
                               +.|+..|+..+|.-..-+..-.. +.+   ..+..++.-..          ++......++.+...|...+
T Consensus        89 ~~~~~gK~~g~Dl~~gk~T~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~L  168 (173)
T 2q80_A           89 KEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQI  168 (173)
T ss_dssp             C------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             40003555332020488769999999845247999999865569999999999999985989999999999999999999


Q ss_pred             HHC
Q ss_conf             528
Q gi|254780161|r  244 RYI  246 (299)
Q Consensus       244 ~~l  246 (299)
                      ..+
T Consensus       169 ~~l  171 (173)
T 2q80_A          169 DAR  171 (173)
T ss_dssp             HHT
T ss_pred             HHC
T ss_conf             819