HHsearch alignment of GI: 254780161 and MMDB domain: 2zco_A_1-105_240-293
>2zco_A (A:1-105,A:240-293) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=95.46 E-value=0.18 Score=28.54 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHH----HHHH
Q ss_conf 8899899999864433---79999999840343034557668899999989988722478763488734678----9996
Q gi|254780161|r 132 SIFDCKQFEHYAFRIS---SRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLD----ILGA 204 (299)
Q Consensus 132 ~~~t~~~L~~Y~~~~a---g~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~----~l~~ 204 (299)
...+.++=..||..+. +.-+.++...+..+...+. ..-+.....+-|+... ..-..+.+ .|..
T Consensus 6 ~~~~l~~~~~~C~~iir~~s~sFylAs~lLP~~~R~ai-------~ALYAFcR~~DDIvD~---~~~p~~~~~r~~~L~~ 75 (159)
T 2zco_A 6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAV-------WAIYAVCRKIDDSIDV---YGDIQFLNQIKEDIQS 75 (159)
T ss_dssp -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHGGGT---TSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH-------HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_conf 65526999999999999749779999987899999999-------9999999987743007---8965779999999887
Q ss_pred CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 39997785246899879999999999999999999964452899999999-99999999999999688872458986896
Q gi|254780161|r 205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF-IPVSITESVLKHAQNHGFKIVSHSHTPNQ 283 (299)
Q Consensus 205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~-l~~~~~~~~L~~l~~~~~~v~~~~~~~~~ 283 (299)
..-..+.+.+|...+.+-.++.+.+. ...+.+.++|++ |++++|..+|.++++.+|- ++.++.+++
T Consensus 76 Wr~~l~~~~~g~~~~PV~~AL~~tv~------------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (159)
T 2zco_A 76 IEKYPYEYHHFQSDRRIMMALQHVAQ------------HKNISIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEK 142 (159)
T ss_dssp HHHCTTSCCCCSSCHHHHHHHHHHHT------------TSCCCTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH------------HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCH
T ss_conf 77667764036887688886799999------------87329977899999999999999999958998-878983289
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6799999999862
Q gi|254780161|r 284 LVRPWYMLSSSIK 296 (299)
Q Consensus 284 ~~~~~~l~r~~~~ 296 (299)
+.|. .+++...+
T Consensus 143 ~~~~-~~~~~~~~ 154 (159)
T 2zco_A 143 RKKA-KLFHEINS 154 (159)
T ss_dssp HHHH-HHHHHHHT
T ss_pred HHHH-HHHHHHHH
T ss_conf 9999-99999999