HHsearch alignment of GI: 254780161 and MMDB domain: 2zco_A_1-105_240-293

>2zco_A (A:1-105,A:240-293) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=95.46  E-value=0.18  Score=28.54  Aligned_cols=141  Identities=12%  Similarity=0.053  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHH----HHHH
Q ss_conf             8899899999864433---79999999840343034557668899999989988722478763488734678----9996
Q gi|254780161|r  132 SIFDCKQFEHYAFRIS---SRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLD----ILGA  204 (299)
Q Consensus       132 ~~~t~~~L~~Y~~~~a---g~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~----~l~~  204 (299)
                      ...+.++=..||..+.   +.-+.++...+..+...+.       ..-+.....+-|+...   ..-..+.+    .|..
T Consensus         6 ~~~~l~~~~~~C~~iir~~s~sFylAs~lLP~~~R~ai-------~ALYAFcR~~DDIvD~---~~~p~~~~~r~~~L~~   75 (159)
T 2zco_A            6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAV-------WAIYAVCRKIDDSIDV---YGDIQFLNQIKEDIQS   75 (159)
T ss_dssp             -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHGGGT---TSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH-------HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_conf             65526999999999999749779999987899999999-------9999999987743007---8965779999999887


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             39997785246899879999999999999999999964452899999999-99999999999999688872458986896
Q gi|254780161|r  205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF-IPVSITESVLKHAQNHGFKIVSHSHTPNQ  283 (299)
Q Consensus       205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~-l~~~~~~~~L~~l~~~~~~v~~~~~~~~~  283 (299)
                      ..-..+.+.+|...+.+-.++.+.+.            ...+.+.++|++ |++++|..+|.++++.+|- ++.++.+++
T Consensus        76 Wr~~l~~~~~g~~~~PV~~AL~~tv~------------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  142 (159)
T 2zco_A           76 IEKYPYEYHHFQSDRRIMMALQHVAQ------------HKNISIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEK  142 (159)
T ss_dssp             HHHCTTSCCCCSSCHHHHHHHHHHHT------------TSCCCTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHH------------HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCH
T ss_conf             77667764036887688886799999------------87329977899999999999999999958998-878983289


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             6799999999862
Q gi|254780161|r  284 LVRPWYMLSSSIK  296 (299)
Q Consensus       284 ~~~~~~l~r~~~~  296 (299)
                      +.|. .+++...+
T Consensus       143 ~~~~-~~~~~~~~  154 (159)
T 2zco_A          143 RKKA-KLFHEINS  154 (159)
T ss_dssp             HHHH-HHHHHHHT
T ss_pred             HHHH-HHHHHHHH
T ss_conf             9999-99999999