Query         gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 299
No_of_seqs    140 out of 1367
Neff          8.3 
Searched_HMMs 33803
Date          Mon May 23 00:06:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780161.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ezf_A Farnesyl-diphosphate f 100.0 1.1E-33 3.4E-38  246.8  12.2  165  133-297     1-171 (209)
  2 >2zco_A Dehydrosqualene syntha 100.0 8.3E-29 2.5E-33  213.8  17.1  134  113-246     1-134 (134)
  3 >1ezf_A Farnesyl-diphosphate f  99.9 1.8E-24 5.3E-29  184.4   1.7  126   15-145     4-130 (131)
  4 >2zco_A Dehydrosqualene syntha  99.8 3.5E-21   1E-25  162.2   7.8  102   11-115     4-108 (159)
  5 >1v4e_A Octoprenyl-diphosphate  97.5  0.0017 5.1E-08   42.2  10.9  136  115-250    10-165 (175)
  6 >2q80_A Geranylgeranyl pyropho  96.7   0.042 1.2E-06   32.9  10.8  131  115-246    10-171 (173)
  7 >3ipi_A Geranyltranstransferas  96.4   0.075 2.2E-06   31.2  11.3  121  115-246   134-266 (295)
  8 >3lmd_A Geranylgeranyl pyropho  96.0    0.12 3.5E-06   29.9  14.7  138  114-251   166-336 (360)
  9 >2zco_A Dehydrosqualene syntha  95.5    0.18 5.4E-06   28.5  10.9  141  132-296     6-154 (159)
 10 >2azj_A Geranylgeranyl pyropho  94.4    0.16 4.8E-06   28.9   6.7   80  115-199    10-109 (157)
 11 >2her_A Fragment, farnesyl pyr  94.4    0.36 1.1E-05   26.6  17.9  139  115-254   175-344 (368)
 12 >1di1_A Aristolochene synthase  94.0    0.42 1.2E-05   26.1  19.3  201   37-250    49-274 (300)
 13 >1ps1_A Pentalenene synthase;   93.9    0.43 1.3E-05   26.0  20.5  173   37-211    53-250 (337)
 14 >5eau_A 5-EPI-aristolochene sy  92.6    0.69   2E-05   24.6  18.8  204   35-251    12-246 (267)
 15 >2ftz_A Geranyltranstransferas  92.3    0.74 2.2E-05   24.4  11.2   77  115-191    11-93  (136)
 16 >1wy0_A Geranylgeranyl pyropho  91.2    0.98 2.9E-05   23.6  18.4  136  115-250   144-325 (342)
 17 >2j1p_A Geranylgeranyl pyropho  91.1    0.43 1.3E-05   26.0   5.0   80  120-199   162-261 (293)
 18 >2e8v_A Geranylgeranyl pyropho  90.9    0.53 1.6E-05   25.4   5.3  105  165-269     4-141 (146)
 19 >1rqj_A Geranyltranstransferas  90.7     1.1 3.2E-05   23.4   9.0  117  120-248   154-279 (299)
 20 >2qis_A Farnesyl pyrophosphate  90.1     1.2 3.6E-05   23.0   7.9   93  163-255     6-123 (134)
 21 >2h8o_A Geranyltranstransferas  89.8     1.3 3.7E-05   22.9   8.6  106  132-249   207-319 (335)
 22 >2ihi_A Pyrophosphate synthase  89.5     1.3   4E-05   22.7  10.4   86  121-206    43-149 (204)
 23 >1rtr_A Geranyltranstransferas  86.2     2.1 6.2E-05   21.4  16.2  106  130-247   161-273 (301)
 24 >1uby_A FPS, farnesyl diphosph  85.1     2.4   7E-05   21.0   6.0   92  163-254     6-122 (134)
 25 >1wmw_A Geranylgeranyl diphosp  79.8     3.7 0.00011   19.7   7.4   42  163-204     2-53  (115)
 26 >3dyh_A Farnesyl pyrophosphate  78.9     3.9 0.00012   19.5   9.3   87  163-249     4-114 (134)
 27 >1yhl_A Farnesyl pyrophosphate  68.0     7.1 0.00021   17.8   9.1   86  163-248     4-113 (134)
 28 >3bny_A Aristolochene synthase  64.0     8.5 0.00025   17.3  21.3  172   36-211    62-258 (320)
 29 >3lji_A Geranyltranstransferas  60.7     9.6 0.00028   16.9  11.6  105  133-249   168-280 (304)
 30 >2ong_A 4S-limonene synthase;   52.8      13 0.00038   16.0  13.7  111  134-253     1-122 (140)
 31 >3kra_B Geranyl diphosphate sy  43.6      18 0.00053   15.1   9.1   26  132-157   164-189 (274)
 32 >1n1b_A (+)-bornyl diphosphate  33.8      25 0.00074   14.1  13.4  110  134-252     1-121 (141)
 33 >1qle_C Cytochrome C oxidase p  24.4      36  0.0011   13.0   2.0   16   75-90     61-76  (77)
 34 >1z72_A Transcriptional regula  24.3      36  0.0011   13.0   5.1   35  200-234    57-91  (92)
 35 >1bed_A DSBA oxidoreductase; T  23.1      38  0.0011   12.8   4.0   37  199-235    45-81  (84)
 36 >3k1z_A Haloacid dehalogenase-  20.9      42  0.0012   12.5   3.2   26   77-103    49-74  (84)
 37 >1acv_A DSBA; disulfide oxidor  20.8      42  0.0013   12.5   3.0   35  200-234    46-80  (84)
 38 >1gqi_A Alpha-glucuronidase; (  20.4      43  0.0013   12.5   2.0   72    2-89     55-126 (340)

No 1  
>>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} (A:132-340)
Probab=100.00  E-value=1.1e-33  Score=246.76  Aligned_cols=165  Identities=7%  Similarity=0.040  Sum_probs=153.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCC
Q ss_conf             899899999864433799999998403430-----345576688999999899887224787634887346789996399
Q gi|254780161|r  133 IFDCKQFEHYAFRISSRLIHLATMILDSER-----YSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGL  207 (299)
Q Consensus       133 ~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~-----~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv  207 (299)
                      .+|++||+.||++|||+||+|++.+++...     .+...+.+.|+|.|+|+||||||+++|+++||+|||.|+|.+||+
T Consensus         1 i~t~~eL~~Yc~~vAg~vg~l~~~il~~~~~~~~~~~~~~~~A~~lG~AlqltniLRDi~~D~~~gr~yLP~e~L~~~gv   80 (209)
T 1ezf_A            1 VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVK   80 (209)
T ss_dssp             CCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCC
T ss_conf             89999999999980269999999996768875120598999999999999999999976989957975686999988599


Q ss_pred             CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             9778524689987999999999999999999996445289999999999-999999999999688872458986896679
Q gi|254780161|r  208 DRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFIP-VSITESVLKHAQNHGFKIVSHSHTPNQLVR  286 (299)
Q Consensus       208 ~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l~-~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~  286 (299)
                      +++++.+++.+++++.++++++++|+.||.+|+++.+.+|+..++++.+ ..++..+|.+++++||++|++++.++++++
T Consensus        81 ~~e~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~lp~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~r~~~~~~~~  160 (209)
T 1ezf_A           81 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQA  160 (209)
T ss_dssp             SGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCC-----
T ss_pred             CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHH
T ss_conf             99998577688999999999999999999999999987896147899999999999999999679401278705509999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999998627
Q gi|254780161|r  287 PWYMLSSSIKK  297 (299)
Q Consensus       287 ~~~l~r~~~~~  297 (299)
                      .|++|++.+++
T Consensus       161 ~~l~~~a~~~~  171 (209)
T 1ezf_A          161 VTLMMDATNMP  171 (209)
T ss_dssp             -----CTTSHH
T ss_pred             HHHHHHCCCHH
T ss_conf             99999648789


No 2  
>>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:106-239)
Probab=99.97  E-value=8.3e-29  Score=213.82  Aligned_cols=134  Identities=12%  Similarity=0.174  Sum_probs=129.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf             98999999999985305888899899999864433799999998403430345576688999999899887224787634
Q gi|254780161|r  113 PNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHR  192 (299)
Q Consensus       113 ~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~  192 (299)
                      |+++|.+||+||++|+++.+|+|++||+.||++|+|+||+|++.+++..+.....+++.++|.|+|+||+|||+++|+++
T Consensus         1 P~~~~~~li~~~~~Dl~~~~~~t~~dl~~Y~~~~ag~vg~l~~~~l~~~~~~~~~~~A~~lG~a~ql~niLRdi~~d~~~   80 (134)
T 2zco_A            1 AFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFEN   80 (134)
T ss_dssp             CHHHHHHHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             33478899899997751233576899999999863399999888850556301789999987798999999989987504


Q ss_pred             CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             887346789996399977852468998799999999999999999999644528
Q gi|254780161|r  193 GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI  246 (299)
Q Consensus       193 gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l  246 (299)
                      ||+|||.|+|.+||++.+++.++..++++++++..++++|+.||.+|++.++.+
T Consensus        81 gr~ylP~d~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~L  134 (134)
T 2zco_A           81 ERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVF  134 (134)
T ss_dssp             TCCCSCHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred             CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             760378799988599999998754335678776689999999898899778758


No 3  
>>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} (A:1-131)
Probab=99.89  E-value=1.8e-24  Score=184.43  Aligned_cols=126  Identities=7%  Similarity=-0.052  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             89999999999999852813879988599888068999999999997760367882-58999999999999977401789
Q gi|254780161|r   15 KIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNP-ITRDMRLQWWKDIFESSTKGLIA   93 (299)
Q Consensus        15 ~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~-~~~~~rL~~w~~~l~~~~~~~~~   93 (299)
                      +.++.++++|.+++|++|++||+++++||++.|++++++|||||++|+|+|+.+.+ ..+..+|+||++.+.+.+.    
T Consensus         4 ~~~~~~~~~~~~~~~~~s~sfy~a~~~Lp~~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~L~~~~~~~~~~~~----   79 (131)
T 1ezf_A            4 NSLSNSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDW----   79 (131)
T ss_dssp             ----CHHHHHHHHHHHHCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTC----
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH----
T ss_conf             3389999999999985695499999868999999999999999987633219999868899999999999862421----


Q ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             8689899999999986189989999999999853058888998999998644
Q gi|254780161|r   94 ESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFR  145 (299)
Q Consensus        94 ~~~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~  145 (299)
                       ..||+..++++++++++++..+|.++|+|+++|+...+|+|+++|..||++
T Consensus        80 -~~~p~~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~~~~~L~~Y~~r  130 (131)
T 1ezf_A           80 -RFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDK  130 (131)
T ss_dssp             -CCCCCCSTTHHHHHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -111368642578861339999998418777778999999998489986445


No 4  
>>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:1-105,A:240-293)
Probab=99.84  E-value=3.5e-21  Score=162.16  Aligned_cols=102  Identities=9%  Similarity=-0.023  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHH
Q ss_conf             770689999999999999852813879988599888068999999999997760367882589999---99999999977
Q gi|254780161|r   11 RKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMR---LQWWKDIFESS   87 (299)
Q Consensus        11 ~~~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~r---L~~w~~~l~~~   87 (299)
                      ..+...+++++.+|.+++|++|++||+|++|+|++.|+++++||||||++|||+|++++|..+.++   |+||++.++++
T Consensus         4 ~~~~~~l~~~~~~C~~iir~~s~sFylAs~lLP~~~R~ai~ALYAFcR~~DDIvD~~~~p~~~~~r~~~L~~Wr~~l~~~   83 (159)
T 2zco_A            4 AAAMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEY   83 (159)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15655269999999999997497799999878999999999999999987743007896577999999988777667764


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf             4017898689899999999986189989
Q gi|254780161|r   88 TKGLIAESISPFSVELLSIVRQYDLPNQ  115 (299)
Q Consensus        88 ~~~~~~~~~~Pv~~aL~~~~~~~~l~~~  115 (299)
                      +.|.   +.|||+.+|.+++++++|.++
T Consensus        84 ~~g~---~~~PV~~AL~~tv~~~~L~~~  108 (159)
T 2zco_A           84 HHFQ---SDRRIMMALQHVAQHKNISIE  108 (159)
T ss_dssp             CCCS---SCHHHHHHHHHHHTTSCCCTT
T ss_pred             CCCC---CCCHHHHHHHHHHHHHHHCHH
T ss_conf             0368---876888867999998732997


No 5  
>>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} (A:125-299)
Probab=97.55  E-value=0.0017  Score=42.24  Aligned_cols=136  Identities=14%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH---
Q ss_conf             999999999985305888-899899999864433799999998---4034303455766889999998998872247---
Q gi|254780161|r  115 QYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATM---ILDSERYSASLRVIKYAGIAQFIGQLICQLP---  187 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~---  187 (299)
                      +.+..++.|...|+.... ..|++++..-+..-.|++..+++.   ++++...+.......++|.++|+.|-+.|+-   
T Consensus        10 ~~~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~lf~~a~~~ga~lag~~~e~~~~~~~~~G~~fQi~dD~~D~~~~~   89 (175)
T 1v4e_A           10 NVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGME   89 (175)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             01110246776677622799999999999874220232033334531123409999999999999999977622567844


Q ss_pred             -------HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             -------876348873467899963999778524689987999------999999999999999996445289999
Q gi|254780161|r  188 -------IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISL------AIKIFAELGLKYLFKAREEMRYILPDV  250 (299)
Q Consensus       188 -------~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~------~~~~~~~~A~~~l~~a~~~~~~lp~~~  250 (299)
                             .|+..|+..+|.-..-++.-....-.....-..+..      ++......+..+.++|...+..+|...
T Consensus        90 ~~~~k~~~Dl~~gk~Tlp~~~al~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~a~~~l~~lp~~~  165 (175)
T 1v4e_A           90 KIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV  165 (175)
T ss_dssp             SCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred             HCCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2089414334179647999999986979999987789999999999838799999999999999887364788878


No 6  
>>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} (A:109-281)
Probab=96.65  E-value=0.042  Score=32.86  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf             9999999999853058--8-88998999998644337999999984---03430345576688999999899887224--
Q gi|254780161|r  115 QYFLDMIEAHFFDSYN--D-SIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL--  186 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~--~-~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi--  186 (299)
                      ..+.++..|...|+..  + .-.|++++..-+..-.|++..+++.+   ++ ...+.......++|.|+|+.|=+.|+  
T Consensus        10 ~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~~~~KTg~lf~~~~~~~a~la-~~~~~l~~~g~~lG~afQi~DD~~d~~~   88 (173)
T 2q80_A           10 RQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFS-DYKEDLKPLLNTLGLFFQIRDDYANLHS   88 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCSCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             101111010035665402345576999999998603102320003544212-2003789999988999998766442004


Q ss_pred             ---------HHHHHCCCCCCCHHHHHHCCCCH-HHH---HCCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------78763488734678999639997-785---24689987999----------99999999999999999644
Q gi|254780161|r  187 ---------PIHYHRGQLYFPLDILGAVGLDR-ESF---LSGQNSDRISL----------AIKIFAELGLKYLFKAREEM  243 (299)
Q Consensus       187 ---------~~d~~~gr~yLP~~~l~~~gv~~-e~l---~~~~~~~~~~~----------~~~~~~~~A~~~l~~a~~~~  243 (299)
                               +.|+..|+..+|.-..-+..-.. +.+   ..+..++.-..          ++......++.+...|...+
T Consensus        89 ~~~~~gK~~g~Dl~~gk~T~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~L  168 (173)
T 2q80_A           89 KEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQI  168 (173)
T ss_dssp             C------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             40003555332020488769999999845247999999865569999999999999985989999999999999999999


Q ss_pred             HHC
Q ss_conf             528
Q gi|254780161|r  244 RYI  246 (299)
Q Consensus       244 ~~l  246 (299)
                      ..+
T Consensus       169 ~~l  171 (173)
T 2q80_A          169 DAR  171 (173)
T ss_dssp             HHT
T ss_pred             HHC
T ss_conf             819


No 7  
>>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} (A:)
Probab=96.37  E-value=0.075  Score=31.17  Aligned_cols=121  Identities=12%  Similarity=-0.007  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC---CC---CCHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf             99999999998530588-889989999986443379999999840---34---303455766889999998998872---
Q gi|254780161|r  115 QYFLDMIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMIL---DS---ERYSASLRVIKYAGIAQFIGQLIC---  184 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~---~~~~~~~~~a~~lG~A~ql~niLR---  184 (299)
                      ..+..++.|...|+... ...|++++..-++.-.|++..+++.+-   ++   .........+.++|.++|+.+=+.   
T Consensus       134 ~~~~~~~~GQ~~d~~~~~~~~s~~~y~~~~~~KT~~l~~~~~~~ga~~~g~~~~~~~~l~~~g~~lG~afQi~DD~~d~~  213 (295)
T 3ipi_A          134 KAGXDXAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFL  213 (295)
T ss_dssp             HHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99986224778876332011219999999987544167889988577873013678999999998999999877764014


Q ss_pred             --CCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             --24787634887346789996399977852468998799999999999999999999644528
Q gi|254780161|r  185 --QLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI  246 (299)
Q Consensus       185 --di~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l  246 (299)
                        +...|+..|+.-+|.-..-+.           .++.....+............+..+.++..
T Consensus       214 g~~~~~Dl~~gk~Tlp~~~a~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (295)
T 3ipi_A          214 EVVEGKESKFTSETLPHIYXKST-----------SKEEALKKSIDCVKLHVAAAKETLETFREC  266 (295)
T ss_dssp             HHHHC-------CCHHHHHTTTS-----------CHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             CCCCHHHHHCCCCCHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77300003237434899998861-----------879999999999999999999998637698


No 8  
>>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} (A:)
Probab=95.98  E-value=0.12  Score=29.85  Aligned_cols=138  Identities=10%  Similarity=0.043  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHC---CCC---CHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf             8999999999985305888-89989999986443379999999840---343---034557668899999989988722-
Q gi|254780161|r  114 NQYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMIL---DSE---RYSASLRVIKYAGIAQFIGQLICQ-  185 (299)
Q Consensus       114 ~~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~~---~~~~~~~~a~~lG~A~ql~niLRd-  185 (299)
                      .+....++.|..+|+.... -.+.+++..-++.-.|++..+++.+.   ++.   ..........++|.|+|+.|=+.| 
T Consensus       166 ~~~~~~~~~Gq~~dl~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~  245 (360)
T 3lmd_A          166 AETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDI  245 (360)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999846678874999999999999999999999999984989999999999999999999888888750


Q ss_pred             ----------CHHHHHCCCCCCCHHHHHHCCCCH-HHHH----CCCCCH-HHHHH---------HHHHHHHHHHHHHHHH
Q ss_conf             ----------478763488734678999639997-7852----468998-79999---------9999999999999999
Q gi|254780161|r  186 ----------LPIHYHRGQLYFPLDILGAVGLDR-ESFL----SGQNSD-RISLA---------IKIFAELGLKYLFKAR  240 (299)
Q Consensus       186 ----------i~~d~~~gr~yLP~~~l~~~gv~~-e~l~----~~~~~~-~~~~~---------~~~~~~~A~~~l~~a~  240 (299)
                                .+.|+..|+.-+|.-..-+..-.. .++.    ....++ .+..+         +......++.+.++|.
T Consensus       246 ~~~~~~~gK~~~~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~a~  325 (360)
T 3lmd_A          246 FSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIAN  325 (360)
T ss_dssp             HC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHCCCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             28877749972047767984099999998598768999999818789999999999999986979999999999999999


Q ss_pred             HHHHHCCHHHH
Q ss_conf             64452899999
Q gi|254780161|r  241 EEMRYILPDVF  251 (299)
Q Consensus       241 ~~~~~lp~~~r  251 (299)
                      ..+..+|....
T Consensus       326 ~~l~~l~~~~~  336 (360)
T 3lmd_A          326 AELDRLPDSTV  336 (360)
T ss_dssp             HHHTTSCCSHH
T ss_pred             HHHHCCCCCHH
T ss_conf             99866999689


No 9  
>>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* (A:1-105,A:240-293)
Probab=95.46  E-value=0.18  Score=28.54  Aligned_cols=141  Identities=12%  Similarity=0.053  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHH----HHHH
Q ss_conf             8899899999864433---79999999840343034557668899999989988722478763488734678----9996
Q gi|254780161|r  132 SIFDCKQFEHYAFRIS---SRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLD----ILGA  204 (299)
Q Consensus       132 ~~~t~~~L~~Y~~~~a---g~vg~l~~~i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~----~l~~  204 (299)
                      ...+.++=..||..+.   +.-+.++...+..+...+.       ..-+.....+-|+...   ..-..+.+    .|..
T Consensus         6 ~~~~l~~~~~~C~~iir~~s~sFylAs~lLP~~~R~ai-------~ALYAFcR~~DDIvD~---~~~p~~~~~r~~~L~~   75 (159)
T 2zco_A            6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAV-------WAIYAVCRKIDDSIDV---YGDIQFLNQIKEDIQS   75 (159)
T ss_dssp             -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHGGGT---TSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH-------HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_conf             65526999999999999749779999987899999999-------9999999987743007---8965779999999887


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             39997785246899879999999999999999999964452899999999-99999999999999688872458986896
Q gi|254780161|r  205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF-IPVSITESVLKHAQNHGFKIVSHSHTPNQ  283 (299)
Q Consensus       205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~-l~~~~~~~~L~~l~~~~~~v~~~~~~~~~  283 (299)
                      ..-..+.+.+|...+.+-.++.+.+.            ...+.+.++|++ |++++|..+|.++++.+|- ++.++.+++
T Consensus        76 Wr~~l~~~~~g~~~~PV~~AL~~tv~------------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  142 (159)
T 2zco_A           76 IEKYPYEYHHFQSDRRIMMALQHVAQ------------HKNISIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEK  142 (159)
T ss_dssp             HHHCTTSCCCCSSCHHHHHHHHHHHT------------TSCCCTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHH------------HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCH
T ss_conf             77667764036887688886799999------------87329977899999999999999999958998-878983289


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             6799999999862
Q gi|254780161|r  284 LVRPWYMLSSSIK  296 (299)
Q Consensus       284 ~~~~~~l~r~~~~  296 (299)
                      +.|. .+++...+
T Consensus       143 ~~~~-~~~~~~~~  154 (159)
T 2zco_A          143 RKKA-KLFHEINS  154 (159)
T ss_dssp             HHHH-HHHHHHHT
T ss_pred             HHHH-HHHHHHHH
T ss_conf             9999-99999999


No 10 
>>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A (A:133-289)
Probab=94.43  E-value=0.16  Score=28.92  Aligned_cols=80  Identities=19%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCC--CCHHHHHHHHHHHHHHHHHHHHHHCCH--
Q ss_conf             9999999999853058888998999998644337999999984---034--303455766889999998998872247--
Q gi|254780161|r  115 QYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMI---LDS--ERYSASLRVIKYAGIAQFIGQLICQLP--  187 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~--~~~~~~~~~a~~lG~A~ql~niLRdi~--  187 (299)
                      +.+..++.|...|+     .|++++..-+..-.|+++.+++.+   ++.  ...........++|.++|+.+=+.|+-  
T Consensus        10 ~~~~~~~~GQ~~Dl-----~s~~~y~~i~~~KTg~Lf~~a~~~ga~~a~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~d   84 (157)
T 2azj_A           10 ELWKDTSVGALRDM-----YDNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK   84 (157)
T ss_dssp             HHHHHHHHHHHHTT-----TTTSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCC
T ss_conf             66467899999986-----6499999999987533777543100011221002578999986332899979986373477


Q ss_pred             -------------HHHHCCCCCCCH
Q ss_conf             -------------876348873467
Q gi|254780161|r  188 -------------IHYHRGQLYFPL  199 (299)
Q Consensus       188 -------------~d~~~gr~yLP~  199 (299)
                                   .|+..|+..+|.
T Consensus        85 ~~~~gk~~gk~~~~Dl~~gk~T~~~  109 (157)
T 2azj_A           85 KVEEIDGSAKQLFKYYREGKLEEYV  109 (157)
T ss_dssp             CTTTCCTTGGGGHHHHTTTCHHHHH
T ss_pred             HHHHCCCCCCHHCCHHHCCCHHHHH
T ss_conf             1220122250103407528889999


No 11 
>>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A* (A:)
Probab=94.35  E-value=0.36  Score=26.59  Aligned_cols=139  Identities=14%  Similarity=0.046  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCC------CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999853058----88899899999864433799999998---4034------303455766889999998998
Q gi|254780161|r  115 QYFLDMIEAHFFDSYN----DSIFDCKQFEHYAFRISSRLIHLATM---ILDS------ERYSASLRVIKYAGIAQFIGQ  181 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~----~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~------~~~~~~~~~a~~lG~A~ql~n  181 (299)
                      +.......|.-.|+..    ....+++++..-+....|++..+++.   ++++      ...........++|.++|+.+
T Consensus       175 ~~~~~~~~Gq~~d~~~~~~~~~~~t~~~y~~~~~~KT~~l~~~~~~~~~~la~~~~~~~~~~~~l~~~g~~lG~afQi~D  254 (368)
T 2her_A          175 ESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHN  254 (368)
T ss_dssp             HHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             75555589999988877502132319988887887543368889999899874110122578999999982606899788


Q ss_pred             HHHCC------HHHHHCCCCCCCHHHHHHCCCCHHH--HH---CCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q ss_conf             87224------7876348873467899963999778--52---46899879999------99999999999999996445
Q gi|254780161|r  182 LICQL------PIHYHRGQLYFPLDILGAVGLDRES--FL---SGQNSDRISLA------IKIFAELGLKYLFKAREEMR  244 (299)
Q Consensus       182 iLRdi------~~d~~~gr~yLP~~~l~~~gv~~e~--l~---~~~~~~~~~~~------~~~~~~~A~~~l~~a~~~~~  244 (299)
                      =+.|+      +.|+..|++-+|.-..-+. .+++.  +.   .+...+.++++      +......++.+.+++.+.+.
T Consensus       255 D~~d~~~~~~~~~Dl~~gk~T~p~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~  333 (368)
T 2her_A          255 DVSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVK  333 (368)
T ss_dssp             HHHHHHSCCSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCHHHCCCCHHHHHHHHHH-CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998665156345666549817999999995-9999999999986787789999999981688999999999999999998


Q ss_pred             HCCHHH-HHHH
Q ss_conf             289999-9999
Q gi|254780161|r  245 YILPDV-FPAF  254 (299)
Q Consensus       245 ~lp~~~-r~~~  254 (299)
                      .+|... +..+
T Consensus       334 ~l~~~~~~~~L  344 (368)
T 2her_A          334 DITDDSLQKVF  344 (368)
T ss_dssp             TCSCHHHHHHH
T ss_pred             HCCCCHHHHHH
T ss_conf             66530178999


No 12 
>>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis; 2.50A {Penicillium roqueforti} (A:)
Probab=94.00  E-value=0.42  Score=26.12  Aligned_cols=201  Identities=8%  Similarity=-0.052  Sum_probs=119.3

Q ss_pred             HHHHHCCHHHHH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-
Q ss_conf             998859988806---8999999999997760367882589999999999999774017898689899999999986189-
Q gi|254780161|r   37 LACLLSPPLYRI---SLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDL-  112 (299)
Q Consensus        37 ~a~~~lP~~~R~---~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~l-  112 (299)
                      +++.+.|.--.+   .+.-+.++.-..||..|........    +...+.+.....+.......|+..++.++..+..- 
T Consensus        49 ~~~~~~P~a~~erl~~~a~~~~~~f~~DD~~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  124 (300)
T 1di1_A           49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMSFADGE----AYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRAH  124 (300)
T ss_dssp             HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999878999999999999999999982010158757699----999999987607899887689999999999999987


Q ss_pred             ---CHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHC--CCC----CHHHHHHHHHHHHHHHHHH
Q ss_conf             ---9899999999998530588---889989999986443379999999840--343----0345576688999999899
Q gi|254780161|r  113 ---PNQYFLDMIEAHFFDSYND---SIFDCKQFEHYAFRISSRLIHLATMIL--DSE----RYSASLRVIKYAGIAQFIG  180 (299)
Q Consensus       113 ---~~~~l~~lid~~~~Dl~~~---~~~t~~~L~~Y~~~~ag~vg~l~~~i~--~~~----~~~~~~~~a~~lG~A~ql~  180 (299)
                         -...+.+++.+........   .++|+++...+-..+.|.-..+.+-.+  +..    ..+......+..+....++
T Consensus       125 ~~~~~~~~~~~~~~~~~e~~~~~~~~~pt~~eY~~~R~~~~g~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~  204 (300)
T 1di1_A          125 DAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVV  204 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999998704688999999999988614388999999997478898888899999999999999998


Q ss_pred             HHHHCCHHHHHCCC---------CCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             88722478763488---------73467899963999778524689987999999999999999999996445289999
Q gi|254780161|r  181 QLICQLPIHYHRGQ---------LYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDV  250 (299)
Q Consensus       181 niLRdi~~d~~~gr---------~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~  250 (299)
                      |=+-......+.|.         .-+-.-.+.++|++.++         ..+.+..++......+.+.......+|+..
T Consensus       205 NDl~S~~KE~~~g~~~~~~~~~~~N~v~~l~~~~g~s~~e---------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (300)
T 1di1_A          205 NDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVAEKIASPDGC  274 (300)
T ss_dssp             HHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             7767789999714445655542100687877742999999---------999999999999999999999874458655


No 13 
>>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} (A:)
Probab=93.94  E-value=0.43  Score=26.04  Aligned_cols=173  Identities=12%  Similarity=0.037  Sum_probs=104.9

Q ss_pred             HHHHHCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC--
Q ss_conf             9988599---88806899999999999776036788258999999999999977401789868989999999998618--
Q gi|254780161|r   37 LACLLSP---PLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD--  111 (299)
Q Consensus        37 ~a~~~lP---~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~--  111 (299)
                      +++.+.|   ++.-..+..+.++.-..||+.|+..........  --...+.....+...++.+|+..++.+...+..  
T Consensus        53 ~~~~~~P~~~~e~l~~~a~~~~~~~~~DD~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (337)
T 1ps1_A           53 LASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTK--QLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEG  130 (337)
T ss_dssp             HHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHH--HHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999778999999999999999999845242575536999999--99999998734888764559999999999999841


Q ss_pred             CCHHHHHH-------HHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHHHHH-HHH-CCCC------CHHHHHHHHHH
Q ss_conf             99899999-------99999853058----888998999998644337999999-984-0343------03455766889
Q gi|254780161|r  112 LPNQYFLD-------MIEAHFFDSYN----DSIFDCKQFEHYAFRISSRLIHLA-TMI-LDSE------RYSASLRVIKY  172 (299)
Q Consensus       112 l~~~~l~~-------lid~~~~Dl~~----~~~~t~~~L~~Y~~~~ag~vg~l~-~~i-~~~~------~~~~~~~~a~~  172 (299)
                      .+......       ++++.......    ..++|+++...+=..+.|+-..+. +.. .+..      ...........
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ps~~eY~~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~l~~~  210 (337)
T 1ps1_A          131 MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQI  210 (337)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             59999999999999999999999997534788999999999988702577899999998589889999961145899999


Q ss_pred             HHHHHHHHHHHHCCHHHHHCCCCC-CCHHHHHHCCCCHHH
Q ss_conf             999998998872247876348873-467899963999778
Q gi|254780161|r  173 AGIAQFIGQLICQLPIHYHRGQLY-FPLDILGAVGLDRES  211 (299)
Q Consensus       173 lG~A~ql~niLRdi~~d~~~gr~y-LP~~~l~~~gv~~e~  211 (299)
                      .+....++|=+-....+...|... +-.-++..+|++.++
T Consensus       211 ~~~~~~l~NDl~S~~KE~~~g~~~N~v~vl~~~~g~s~~~  250 (337)
T 1ps1_A          211 AVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR  250 (337)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHH
T ss_conf             9999999889888999996387511789998638989999


No 14 
>>5eau_A 5-EPI-aristolochene synthase; isoprenoid synthase, natural products biosynthesis, isoprenoid cyclase; HET: FFF; 2.15A {Nicotiana tabacum} (A:261-527)
Probab=92.57  E-value=0.69  Score=24.65  Aligned_cols=204  Identities=9%  Similarity=0.031  Sum_probs=122.0

Q ss_pred             HHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHHHHHHH
Q ss_conf             87998859988---806899999999999776036788258999999999999977---401789868989999999998
Q gi|254780161|r   35 RYLACLLSPPL---YRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESS---TKGLIAESISPFSVELLSIVR  108 (299)
Q Consensus        35 ~y~a~~~lP~~---~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~---~~~~~~~~~~Pv~~aL~~~~~  108 (299)
                      |+.++.+.+++   .|..+.-+.++--.+||.-|........+    ...+.+...   ..+....+.+|+..++..+..
T Consensus        12 f~~~~~~~~p~~~~~r~~~a~~~~~~f~~DD~~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   87 (267)
T 5eau_A           12 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE----AYTDAIQRWDINEIDRLPDYMKISYKAILDLYK   87 (267)
T ss_dssp             HHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHH----HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHEEHHHHHHCCCCCHHHHH----HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             9988634784568999999999842101122415778799999----999999836850332187069999999999999


Q ss_pred             HCC------CCH-------HHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHC-CCCCH------H
Q ss_conf             618------998-------9999999999853---05888899899999864433799999-99840-34303------4
Q gi|254780161|r  109 QYD------LPN-------QYFLDMIEAHFFD---SYNDSIFDCKQFEHYAFRISSRLIHL-ATMIL-DSERY------S  164 (299)
Q Consensus       109 ~~~------l~~-------~~l~~lid~~~~D---l~~~~~~t~~~L~~Y~~~~ag~vg~l-~~~i~-~~~~~------~  164 (299)
                      +..      -..       ..+...+++..+.   ......+|++|....-..+.|.-..+ +.++. |...+      +
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~ps~~eYl~~R~~t~g~~~~~~l~e~~~g~~lp~~~~~~~  167 (267)
T 5eau_A           88 DYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQDFEWLS  167 (267)
T ss_dssp             HHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHC
T ss_conf             99999999568210999999999999999999999855989976776154267431899999999837988699998750


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC-CCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55766889999998998872247876348873-46789996399977852468998799999999999999999999644
Q gi|254780161|r  165 ASLRVIKYAGIAQFIGQLICQLPIHYHRGQLY-FPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEM  243 (299)
Q Consensus       165 ~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~y-LP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~  243 (299)
                      .........+....++|=+-..+...+.|... +..-.+.++|++.++         ..+-+.++++.....+.+.....
T Consensus       168 ~~~~l~~~~~~~~~l~NDi~S~~kE~~~g~~~N~V~vl~~~~g~s~~e---------A~~~~~~~i~~~~~~~~~~~~~~  238 (267)
T 5eau_A          168 KNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKE---------AMAKFQNMAETAWKDINEGLLRP  238 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSHHHHHTTTCTTSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             347999999999999656367787984798520145454379999999---------99999999999999999998079


Q ss_pred             HHCCHHHH
Q ss_conf             52899999
Q gi|254780161|r  244 RYILPDVF  251 (299)
Q Consensus       244 ~~lp~~~r  251 (299)
                      ..+|+.+.
T Consensus       239 ~~~p~~~~  246 (267)
T 5eau_A          239 TPVSTEFL  246 (267)
T ss_dssp             CSSCGGGT
T ss_pred             CCCCHHHH
T ss_conf             99999999


No 15 
>>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} (A:131-266)
Probab=92.32  E-value=0.74  Score=24.44  Aligned_cols=77  Identities=10%  Similarity=0.011  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHCCC--C-CCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             9999999999853058--8-8899899999864433799999998---40343034557668899999989988722478
Q gi|254780161|r  115 QYFLDMIEAHFFDSYN--D-SIFDCKQFEHYAFRISSRLIHLATM---ILDSERYSASLRVIKYAGIAQFIGQLICQLPI  188 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~~--~-~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~  188 (299)
                      +.+..++.|...|+..  + .-.|.+++..-+..-.|++..+++.   ++++.+.+....+..++|.|+|+.+=+.|+-.
T Consensus        11 ~~~~~l~~GQ~~Di~~~~~~~~~~~~~y~~i~~~KT~~Lf~~~~~~ga~l~g~~~~~~~~~g~~lG~aFQi~DDilD~~~   90 (136)
T 2ftz_A           11 ETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILG   90 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             87502157888776553013333137888886440677665122022022024788998863112266763134335156


Q ss_pred             HHH
Q ss_conf             763
Q gi|254780161|r  189 HYH  191 (299)
Q Consensus       189 d~~  191 (299)
                      |.+
T Consensus        91 ~~~   93 (136)
T 2ftz_A           91 SFE   93 (136)
T ss_dssp             HCC
T ss_pred             CCC
T ss_conf             732


No 16 
>>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} (A:)
Probab=91.16  E-value=0.98  Score=23.61  Aligned_cols=136  Identities=15%  Similarity=0.107  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999985305--8888998999998644337999999984---03430---345576688999999899887224
Q gi|254780161|r  115 QYFLDMIEAHFFDSY--NDSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL  186 (299)
Q Consensus       115 ~~l~~lid~~~~Dl~--~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi  186 (299)
                      .....+..|.-.|+.  .....+.+++..-++.-.|++..+++.+   +++.+   .........++|.++|+.+=++|+
T Consensus       144 ~~~~~~~~Gq~~dl~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~~~~~~~~~~~~~~~~g~~lG~afQi~DD~~d~  223 (342)
T 1wy0_A          144 KASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDL  223 (342)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             67645522520333332156787999999999888999999986140001599999999999999999999998887531


Q ss_pred             -----------HHHHHCCCCCCCHHHHHHCCCCH-HH-HH---CCCCC----------------HHHHH------HHHHH
Q ss_conf             -----------78763488734678999639997-78-52---46899----------------87999------99999
Q gi|254780161|r  187 -----------PIHYHRGQLYFPLDILGAVGLDR-ES-FL---SGQNS----------------DRISL------AIKIF  228 (299)
Q Consensus       187 -----------~~d~~~gr~yLP~~~l~~~gv~~-e~-l~---~~~~~----------------~~~~~------~~~~~  228 (299)
                                 ..|+..|+..+|.-..-+..-.. .+ +.   .....                ..+++      .+...
T Consensus       224 ~~~~~~~gK~~~~Dl~~gk~T~p~~~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  303 (342)
T 1wy0_A          224 IADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA  303 (342)
T ss_dssp             HSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf             48877608333456764101589999999711778999999971424206655444420389999999999986989999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9999999999996445289999
Q gi|254780161|r  229 AELGLKYLFKAREEMRYILPDV  250 (299)
Q Consensus       229 ~~~A~~~l~~a~~~~~~lp~~~  250 (299)
                      ...++.+.++|.+.+..+|...
T Consensus       304 ~~~~~~~~~~a~~~l~~l~~~~  325 (342)
T 1wy0_A          304 AEIAKDMIKKANEALRILPKSK  325 (342)
T ss_dssp             HHHHHHHHHHHHTTGGGSCCCH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCH
T ss_conf             9999999999999986699978


No 17 
>>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A (A:)
Probab=91.14  E-value=0.43  Score=26.01  Aligned_cols=80  Identities=5%  Similarity=0.157  Sum_probs=50.3

Q ss_pred             HHHHHHHHCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCHH-
Q ss_conf             99999853058888----998999998644337999999984---03430---34557668899999989988722478-
Q gi|254780161|r  120 MIEAHFFDSYNDSI----FDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQLPI-  188 (299)
Q Consensus       120 lid~~~~Dl~~~~~----~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~~-  188 (299)
                      +.++...|+.....    .|.+++..-++...|++..+.+.+   +++..   .+.......++|.|+|+.|=+.|+-. 
T Consensus       162 ~~~gq~~d~~~~~~~~~~~t~~~y~~i~~~KT~~lf~~~~~lga~lag~~~~~~~~~~~~g~~lG~afQi~DD~ld~~~~  241 (293)
T 2j1p_A          162 LVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS  241 (293)
T ss_dssp             HHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEHHCCHHHHHHHCC
T ss_conf             99998653456640345578999999999878999997999746340031999999996760645001000875654168


Q ss_pred             ---------HHHCCCCCCCH
Q ss_conf             ---------76348873467
Q gi|254780161|r  189 ---------HYHRGQLYFPL  199 (299)
Q Consensus       189 ---------d~~~gr~yLP~  199 (299)
                               |+..|++-+|.
T Consensus       242 ~~~~gk~~~Di~~gk~T~p~  261 (293)
T 2j1p_A          242 SKLTYPKLXGLEKSREFAEK  261 (293)
T ss_dssp             -CCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             61368889538989999999


No 18 
>>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... (A:195-340)
Probab=90.93  E-value=0.53  Score=25.41  Aligned_cols=105  Identities=13%  Similarity=0.048  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-----------HHHHHCCCCCCCHHHHH-HCCCCHHH-----H---HC-C-CCCHHHH
Q ss_conf             5576688999999899887224-----------78763488734678999-63999778-----5---24-6-8998799
Q gi|254780161|r  165 ASLRVIKYAGIAQFIGQLICQL-----------PIHYHRGQLYFPLDILG-AVGLDRES-----F---LS-G-QNSDRIS  222 (299)
Q Consensus       165 ~~~~~a~~lG~A~ql~niLRdi-----------~~d~~~gr~yLP~~~l~-~~gv~~e~-----l---~~-~-~~~~~~~  222 (299)
                      .......++|.|+|+.+=+.|+           +.|+..|+.-+|.-..- +..-...+     +   .. + ..++.+.
T Consensus         4 ~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (146)
T 2e8v_A            4 SLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKL   83 (146)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             88888752015787501000001446641356553676285539999999964652166999999999745799989999


Q ss_pred             HHHHH----------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             99999----------9999999999999644528999999999999-99999999996
Q gi|254780161|r  223 LAIKI----------FAELGLKYLFKAREEMRYILPDVFPAFIPVS-ITESVLKHAQN  269 (299)
Q Consensus       223 ~~~~~----------~~~~A~~~l~~a~~~~~~lp~~~r~~~l~~~-~~~~~L~~l~~  269 (299)
                      .++..          ....++.+.+.|...+..+|+.....+.-.. .-..++..|-+
T Consensus        84 ~~~~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~~~~~~L~~l~~~~~~r~~~~~~i~~  141 (146)
T 2e8v_A           84 KLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIID  141 (146)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999862599999999999998704473889999887426999999999999999


No 19 
>>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} (A:)
Probab=90.74  E-value=1.1  Score=23.35  Aligned_cols=117  Identities=12%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             HHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH----CCCCCH---HHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             999998530588-88998999998644337999999984----034303---4557668899999989988722478763
Q gi|254780161|r  120 MIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMI----LDSERY---SASLRVIKYAGIAQFIGQLICQLPIHYH  191 (299)
Q Consensus       120 lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i----~~~~~~---~~~~~~a~~lG~A~ql~niLRdi~~d~~  191 (299)
                      +.++...++... .-.|.+++..-+..-.|++..+++.+    .+..+.   .....+..++|.|+|+.|=+.|+--+-.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~g~~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~  233 (299)
T 1rqj_A          154 MCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTA  233 (299)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             99999999980178999999999999987647887887424556532147889999999999999999988765306345


Q ss_pred             C-CCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             4-88734678999639997785246899879999999999999999999964452899
Q gi|254780161|r  192 R-GQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP  248 (299)
Q Consensus       192 ~-gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~  248 (299)
                      . |+-            ..+|+..|..|=-+.-+++.--...+.++.++.......|.
T Consensus       234 ~~gK~------------~~~Di~~gk~T~~~~~al~~a~~~~~~~~~~~~~~~~~~~~  279 (299)
T 1rqj_A          234 TLGKR------------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE  279 (299)
T ss_dssp             HHSSC------------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCC------------CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             21986------------20187669520999999998799999999999999986112


No 20 
>>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 2f94_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* (A:241-374)
Probab=90.08  E-value=1.2  Score=22.98  Aligned_cols=93  Identities=8%  Similarity=-0.015  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHCCCCCCCHHHHHHCCCCHHHHH----CCCCCHH----HHHH
Q ss_conf             3455766889999998998872247----------87634887346789996399977852----4689987----9999
Q gi|254780161|r  163 YSASLRVIKYAGIAQFIGQLICQLP----------IHYHRGQLYFPLDILGAVGLDRESFL----SGQNSDR----ISLA  224 (299)
Q Consensus       163 ~~~~~~~a~~lG~A~ql~niLRdi~----------~d~~~gr~yLP~~~l~~~gv~~e~l~----~~~~~~~----~~~~  224 (299)
                      .........++|.|+|+.+=+.|+-          .|+..|+.-+|.-..-.++-..+...    .+..++.    +.++
T Consensus         6 ~~~l~~~g~~lGiafQI~DD~lD~~~~~~~gK~~g~Dl~~gk~T~pii~al~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   85 (134)
T 2qis_A            6 HANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKAL   85 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999899999999998643113004602220124647269007999999993999999999998679998999999999


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHH
Q ss_conf             ------99999999999999996445289999-99999
Q gi|254780161|r  225 ------IKIFAELGLKYLFKAREEMRYILPDV-FPAFI  255 (299)
Q Consensus       225 ------~~~~~~~A~~~l~~a~~~~~~lp~~~-r~~~l  255 (299)
                            +......+..+..+|...+..+|... +.++.
T Consensus        86 i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~L~  123 (134)
T 2qis_A           86 YEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFL  123 (134)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             99879899999999999999999998089936899999


No 21 
>>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} (A:)
Probab=89.84  E-value=1.3  Score=22.86  Aligned_cols=106  Identities=9%  Similarity=-0.050  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH---CCC---CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCHHHHHH
Q ss_conf             88998999998644337999999984---034---30345576688999999899887224787634-887346789996
Q gi|254780161|r  132 SIFDCKQFEHYAFRISSRLIHLATMI---LDS---ERYSASLRVIKYAGIAQFIGQLICQLPIHYHR-GQLYFPLDILGA  204 (299)
Q Consensus       132 ~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~---~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~-gr~yLP~~~l~~  204 (299)
                      .-.|++++..-++.-.|++..+++.+   +++   ...........++|.|+|+.|=+.|+-.|-.. |+-         
T Consensus       207 ~~~t~~~y~~i~~~KT~~l~~~~~~lga~~ag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~---------  277 (335)
T 2h8o_A          207 KAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKA---------  277 (335)
T ss_dssp             SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC---------
T ss_conf             01358899987524610055667888776531114678999999998888999999873124899897975---------


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             399977852468998799999999999999999999644528999
Q gi|254780161|r  205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD  249 (299)
Q Consensus       205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~  249 (299)
                         .-+|+..+..|--+--.++..-+..+.++..+.......|..
T Consensus       278 ---~~~Dl~~gk~T~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  319 (335)
T 2h8o_A          278 ---TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGEK  319 (335)
T ss_dssp             -----------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred             ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             ---627987697549999999999999999999999987756846


No 22 
>>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3cc9_A* 3ez3_A* (A:173-376)
Probab=89.49  E-value=1.3  Score=22.68  Aligned_cols=86  Identities=7%  Similarity=-0.003  Sum_probs=55.9

Q ss_pred             HHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHC----CCC-----CHHHHHHHHHHHHHHHHHHHHHHCCH--
Q ss_conf             9999853058--8889989999986443379999999840----343-----03455766889999998998872247--
Q gi|254780161|r  121 IEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMIL----DSE-----RYSASLRVIKYAGIAQFIGQLICQLP--  187 (299)
Q Consensus       121 id~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i~----~~~-----~~~~~~~~a~~lG~A~ql~niLRdi~--  187 (299)
                      ..|...|+..  ..-.|++++..-+..-.|++..+++.+.    +..     ..........++|.|+|+.|=+.|+-  
T Consensus        43 ~~Gq~~d~~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~~a~l~g~~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~  122 (204)
T 2ihi_A           43 NNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGD  122 (204)
T ss_dssp             TCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred             CCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             11210011012324389999999999744899999999999987125410789999999999988999985403553157


Q ss_pred             --------HHHHCCCCCCCHHHHHHCC
Q ss_conf             --------8763488734678999639
Q gi|254780161|r  188 --------IHYHRGQLYFPLDILGAVG  206 (299)
Q Consensus       188 --------~d~~~gr~yLP~~~l~~~g  206 (299)
                              .|+..|+..+|.-..-+..
T Consensus       123 ~~~~~k~~~Dl~~gk~Tlp~~~al~~~  149 (204)
T 2ihi_A          123 STKTGKVGSDIQNNKLTWPLIKTFELC  149 (204)
T ss_dssp             --------CTTTTTCCCHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             310012448503796269999999959


No 23 
>>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} (A:)
Probab=86.20  E-value=2.1  Score=21.36  Aligned_cols=106  Identities=11%  Similarity=-0.068  Sum_probs=65.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-CCCCCCCHHHH
Q ss_conf             8888998999998644337999999984---0343---034557668899999989988722478763-48873467899
Q gi|254780161|r  130 NDSIFDCKQFEHYAFRISSRLIHLATMI---LDSE---RYSASLRVIKYAGIAQFIGQLICQLPIHYH-RGQLYFPLDIL  202 (299)
Q Consensus       130 ~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~---~~~~~~~~a~~lG~A~ql~niLRdi~~d~~-~gr~yLP~~~l  202 (299)
                      .....+++++..-+..-.|++..+++.+   +++.   ..........++|.++|+.|=+.|+-.+-. .|+-       
T Consensus       161 ~~~~~~~~~y~~~~~~KT~~l~~~~~~~ga~l~g~~~~~~~~l~~~g~~lG~a~Qi~dD~~d~~~~~~~~gK~-------  233 (301)
T 1rtr_A          161 EGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKK-------  233 (301)
T ss_dssp             TTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-------
T ss_conf             2678999999999976231143146776420023016766899999998999998887866532777762998-------


Q ss_pred             HHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             963999778524689987999999999999999999996445289
Q gi|254780161|r  203 GAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYIL  247 (299)
Q Consensus       203 ~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp  247 (299)
                           ..+|+..+..|--+--+++..-...+.++..+.......+
T Consensus       234 -----~~~Di~~gk~T~p~~~al~~~~~~~~~~l~~~~~~~~~~~  273 (301)
T 1rtr_A          234 -----VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID  273 (301)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             -----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -----0007666983199999999999999999999999998786


No 24 
>>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} (A:234-367)
Probab=85.09  E-value=2.4  Score=21.01  Aligned_cols=92  Identities=7%  Similarity=-0.090  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHHCCCCHHHH----HCCCCCHH----HHH-
Q ss_conf             345576688999999899887224----------78763488734678999639997785----24689987----999-
Q gi|254780161|r  163 YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGAVGLDRESF----LSGQNSDR----ISL-  223 (299)
Q Consensus       163 ~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~~gv~~e~l----~~~~~~~~----~~~-  223 (299)
                      .........++|.|+|+.|=+.|+          +.|+..|+.-+|.-..-+..-+....    ..+..++.    +.+ 
T Consensus         6 ~~~l~~~g~~lGiafQi~DD~ld~~~~~~~gK~~g~Dl~~gk~Tlpii~al~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   85 (134)
T 1uby_A            6 HENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKEL   85 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             64456677525118998515655314501020123444058775999999993999999999998679999999999999


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHH
Q ss_conf             -----999999999999999996445289999-9999
Q gi|254780161|r  224 -----AIKIFAELGLKYLFKAREEMRYILPDV-FPAF  254 (299)
Q Consensus       224 -----~~~~~~~~A~~~l~~a~~~~~~lp~~~-r~~~  254 (299)
                           .+......++.|...|...+..+|... ++.+
T Consensus        86 i~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~L  122 (134)
T 1uby_A           86 YEAVGMRAAFQQYEESSYRRLQELIEKHSNRLPKEIF  122 (134)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             9987869999999999999999997627983899999


No 25 
>>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8} (A:193-307)
Probab=79.82  E-value=3.7  Score=19.70  Aligned_cols=42  Identities=17%  Similarity=-0.130  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHH
Q ss_conf             345576688999999899887224----------787634887346789996
Q gi|254780161|r  163 YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGA  204 (299)
Q Consensus       163 ~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~  204 (299)
                      ++.......++|.|+|+.+=+.|+          +.|+..|+..+|.-..-.
T Consensus         2 ~e~l~~~g~~lG~afQi~DD~lD~~~~~~~gK~~g~Dl~~gK~T~pii~al~   53 (115)
T 1wmw_A            2 PAAYEEGGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLE   53 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             0479998887899999988777641113320122002136776199999999


No 26 
>>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* (A:257-390)
Probab=78.92  E-value=3.9  Score=19.51  Aligned_cols=87  Identities=5%  Similarity=-0.089  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHCCCCCCCHHHHHHCCCCHHHH--H--CCCCCH----HHHH-
Q ss_conf             3455766889999998998872247----------8763488734678999639997785--2--468998----7999-
Q gi|254780161|r  163 YSASLRVIKYAGIAQFIGQLICQLP----------IHYHRGQLYFPLDILGAVGLDRESF--L--SGQNSD----RISL-  223 (299)
Q Consensus       163 ~~~~~~~a~~lG~A~ql~niLRdi~----------~d~~~gr~yLP~~~l~~~gv~~e~l--~--~~~~~~----~~~~-  223 (299)
                      .........++|.++|+.+=+.|+-          .|+..|+..+|.-..-..+-.....  .  .+..++    .+.+ 
T Consensus         4 ~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~~k~g~Dl~~gk~T~Pii~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (134)
T 3dyh_A            4 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRL   83 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             76689999999999999886223315888849978856368305999999985999999999998679998999999999


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             -----99999999999999999644528999
Q gi|254780161|r  224 -----AIKIFAELGLKYLFKAREEMRYILPD  249 (299)
Q Consensus       224 -----~~~~~~~~A~~~l~~a~~~~~~lp~~  249 (299)
                           .+......++.+..+|...+..+|..
T Consensus        84 i~~~~~~~~~~~~~~~~~~~a~~~L~~lp~~  114 (134)
T 3dyh_A           84 YEEADLQGDYVAYEAAVAEQVKELIEKLRLC  114 (134)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9986978999999999999999999847567


No 27 
>>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* (A:229-362)
Probab=67.95  E-value=7.1  Score=17.76  Aligned_cols=86  Identities=7%  Similarity=-0.058  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHHCCCCHHHH----HCCCCCH----HHHH-
Q ss_conf             345576688999999899887224----------78763488734678999639997785----2468998----7999-
Q gi|254780161|r  163 YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGAVGLDRESF----LSGQNSD----RISL-  223 (299)
Q Consensus       163 ~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~~gv~~e~l----~~~~~~~----~~~~-  223 (299)
                      ......+..++|.|+|+.|=+.|+          +.|+..|+.-+|.-..-...-+....    ..+..++    .+.+ 
T Consensus         4 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~~k~g~Dl~~gk~T~pi~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (134)
T 1yhl_A            4 MNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRL   83 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             87677689999899998565134525888869874577379106999999980999999999998689998999999999


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             -----9999999999999999964452899
Q gi|254780161|r  224 -----AIKIFAELGLKYLFKAREEMRYILP  248 (299)
Q Consensus       224 -----~~~~~~~~A~~~l~~a~~~~~~lp~  248 (299)
                           ++......++.+..+|...+..+|.
T Consensus        84 l~~~~~~~~~~~~~~~~~~~a~~~l~~l~~  113 (134)
T 1yhl_A           84 YSEANLQADFAAYEAEVVREVESLIEQLKV  113 (134)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             998698999999999999999999986779


No 28 
>>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* (A:)
Probab=63.99  E-value=8.5  Score=17.26  Aligned_cols=172  Identities=8%  Similarity=-0.016  Sum_probs=101.0

Q ss_pred             HHHHHHCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-
Q ss_conf             799885998880---6899999999999776036788258999999999999977401789868989999999998618-
Q gi|254780161|r   36 YLACLLSPPLYR---ISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD-  111 (299)
Q Consensus        36 y~a~~~lP~~~R---~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~-  111 (299)
                      .+++.+.|.--.   ..+.-+.++.-..||..|+....    .......+.+.............+.-..+........ 
T Consensus        62 ~~~a~~~P~a~~e~l~~~a~~~~~~f~~DD~~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (320)
T 3bny_A           62 RVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFE----EGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRA  137 (320)
T ss_dssp             HHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             88999879999999999999999999952543046725----48999999998613788999878899999999999997


Q ss_pred             ---CCHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CC----CHHHHHHHHHHHHHHHHH
Q ss_conf             ---9989999999999853058---88899899999864433799999998403--43----034557668899999989
Q gi|254780161|r  112 ---LPNQYFLDMIEAHFFDSYN---DSIFDCKQFEHYAFRISSRLIHLATMILD--SE----RYSASLRVIKYAGIAQFI  179 (299)
Q Consensus       112 ---l~~~~l~~lid~~~~Dl~~---~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~--~~----~~~~~~~~a~~lG~A~ql  179 (299)
                         --...+..++.+.......   ..+++++|...+-..+.|.-..+.+-.++  ..    ..+.........+....+
T Consensus       138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~~eY~~~R~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l  217 (320)
T 3bny_A          138 HDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSV  217 (320)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             69999999999999999987676437899999999998853528789999999858999977867799999999999999


Q ss_pred             HHHHHCCHHHHHCCCC---------CCCHHHHHHCCCCHHH
Q ss_conf             9887224787634887---------3467899963999778
Q gi|254780161|r  180 GQLICQLPIHYHRGQL---------YFPLDILGAVGLDRES  211 (299)
Q Consensus       180 ~niLRdi~~d~~~gr~---------yLP~~~l~~~gv~~e~  211 (299)
                      +|=+-+...+.+.|..         -+..-.+..+|++.++
T Consensus       218 ~NDl~S~~KE~~~g~~~~~~~~~~~N~v~~l~~~~g~s~~e  258 (320)
T 3bny_A          218 VNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEA  258 (320)
T ss_dssp             HHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHCCCCHHH
T ss_conf             87888888888721211246764200221114524999999


No 29 
>>3lji_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.39A {Pseudomonas fluorescens} (A:)
Probab=60.75  E-value=9.6  Score=16.87  Aligned_cols=105  Identities=13%  Similarity=0.077  Sum_probs=54.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH----HHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCHHHHHH
Q ss_conf             89989999986443379999999----840343---0345576688999999899887224787634-887346789996
Q gi|254780161|r  133 IFDCKQFEHYAFRISSRLIHLAT----MILDSE---RYSASLRVIKYAGIAQFIGQLICQLPIHYHR-GQLYFPLDILGA  204 (299)
Q Consensus       133 ~~t~~~L~~Y~~~~ag~vg~l~~----~i~~~~---~~~~~~~~a~~lG~A~ql~niLRdi~~d~~~-gr~yLP~~~l~~  204 (299)
                      -.+++++..-+..-.|++..+++    .++++.   ..........++|.++|+.|=+.|+--|... |+-         
T Consensus       168 ~~~~~~y~~~~~~KTa~l~~~a~~~~a~l~~g~~~~~~~~l~~~g~~lG~afQi~dD~ld~~~d~~~~gK~---------  238 (304)
T 3lji_A          168 KLDQQALEYXHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKR---------  238 (304)
T ss_dssp             CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC---------
T ss_conf             34479999999999899999999999998466324589999999999999999998752023898886987---------


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             399977852468998799999999999999999999644528999
Q gi|254780161|r  205 VGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD  249 (299)
Q Consensus       205 ~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~  249 (299)
                         .-+|+..+..|=-+--+++.--+..+..+..+.......|..
T Consensus       239 ---~~~Dl~~gk~T~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 3lji_A          239 ---QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA  280 (304)
T ss_dssp             ------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred             ---HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ---624777698669999999987999999999999976647800


No 30 
>>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* (A:384-523)
Probab=52.79  E-value=13  Score=16.01  Aligned_cols=111  Identities=7%  Similarity=-0.004  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCC--CCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHH
Q ss_conf             998999998644337999999984034--3034-------5576688999999899887224787634887-34678999
Q gi|254780161|r  134 FDCKQFEHYAFRISSRLIHLATMILDS--ERYS-------ASLRVIKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDILG  203 (299)
Q Consensus       134 ~t~~~L~~Y~~~~ag~vg~l~~~i~~~--~~~~-------~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~  203 (299)
                      +|++|......-+.|.....+...++.  ...+       .........|...-|.|=+........+|.+ -.=.-.|.
T Consensus         1 Pt~eEYl~~~~iS~g~~~~~~~~~~~mg~~~t~e~~~~~~~~~~l~~~~~~i~RL~NDi~s~~~E~~rg~~~s~I~cyMk   80 (140)
T 2ong_A            1 PSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMS   80 (140)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHH
T ss_pred             CCHHHHHCCEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf             98788843504652268999999984787657999974300449999999999981065677868725874037999850


Q ss_pred             HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHH
Q ss_conf             63999778524689987999999999999999999996-445289999999
Q gi|254780161|r  204 AVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKARE-EMRYILPDVFPA  253 (299)
Q Consensus       204 ~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~-~~~~lp~~~r~~  253 (299)
                      +||+++|+         ....+..+++.+..-+.+..- .-..+|+.+.-.
T Consensus        81 e~gvseee---------A~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~  122 (140)
T 2ong_A           81 DYNASEAE---------ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGC  122 (140)
T ss_dssp             HTCCCHHH---------HHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHH
T ss_pred             CCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             69999999---------9999999999999999999824899889999999


No 31 
>>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* (B:)
Probab=43.60  E-value=18  Score=15.07  Aligned_cols=26  Identities=4%  Similarity=-0.152  Sum_probs=18.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88998999998644337999999984
Q gi|254780161|r  132 SIFDCKQFEHYAFRISSRLIHLATMI  157 (299)
Q Consensus       132 ~~~t~~~L~~Y~~~~ag~vg~l~~~i  157 (299)
                      .-.+.+.+..-+....|+++.+.+.+
T Consensus       164 ~~~t~~~y~~~~~~KT~~lf~~~~~l  189 (274)
T 3kra_B          164 GNTSLDFIEYVCKKKYGEMHACGAAC  189 (274)
T ss_dssp             TSSCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989999999999889999999999


No 32 
>>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} (A:390-530)
Probab=33.80  E-value=25  Score=14.06  Aligned_cols=110  Identities=10%  Similarity=-0.001  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHH-------HHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHH
Q ss_conf             99899999864433799999998403430---345576-------688999999899887224787634887-3467899
Q gi|254780161|r  134 FDCKQFEHYAFRISSRLIHLATMILDSER---YSASLR-------VIKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDIL  202 (299)
Q Consensus       134 ~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~---~~~~~~-------~a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l  202 (299)
                      +|++|...-..-+.|....++...++..+   .....+       ..+..|.-.-|.|=+..-....++|.+ --=.--|
T Consensus         1 Pt~eEYl~n~~iS~~~~~l~~~~~~~mg~~i~~~e~~ew~~~~p~l~~~~~~i~RL~nDi~s~~~E~~rg~~as~I~cYM   80 (141)
T 1n1b_A            1 PSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYM   80 (141)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHH
T ss_pred             CCHHHHHHHCEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             98898865001220289999999985677643599998651127999999999998645014687871797314899986


Q ss_pred             HHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             96399977852468998799999999999999999999644528999999
Q gi|254780161|r  203 GAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFP  252 (299)
Q Consensus       203 ~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~  252 (299)
                      .+||+++|+         ...-+..+++.+..-+.+..-....+|..+.-
T Consensus        81 ke~gvseEe---------A~~~i~~~ie~~wK~lN~e~l~~~~~p~~~~~  121 (141)
T 1n1b_A           81 KETNASEEE---------AVEHVKFLIREAWKDMNTAIAAGYPFPDGMVA  121 (141)
T ss_dssp             HHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred             CCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             379989999---------99999999999999999998179999999999


No 33 
>>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:1-77)
Probab=24.41  E-value=36  Score=12.99  Aligned_cols=16  Identities=25%  Similarity=0.935  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999999977401
Q gi|254780161|r   75 MRLQWWKDIFESSTKG   90 (299)
Q Consensus        75 ~rL~~w~~~l~~~~~~   90 (299)
                      .-.+||||.+.+..+|
T Consensus        61 ~~~~WwrDVirEst~G   76 (77)
T 1qle_C           61 VMFGWWADVVNEGETG   76 (77)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999974177


No 34 
>>1z72_A Transcriptional regulator, putative; structural genomics, PSI, protein structure initiative; 1.45A {Streptococcus pneumoniae TIGR4} (A:45-136)
Probab=24.35  E-value=36  Score=12.98  Aligned_cols=35  Identities=3%  Similarity=-0.050  Sum_probs=29.3

Q ss_pred             HHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             89996399977852468998799999999999999
Q gi|254780161|r  200 DILGAVGLDRESFLSGQNSDRISLAIKIFAELGLK  234 (299)
Q Consensus       200 ~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~  234 (299)
                      +.++++|++.+++...+.++....-...+...|..
T Consensus        57 ~~~~~~gi~~~~~~~~~~~p~~~aYt~~ll~~a~~   91 (92)
T 1z72_A           57 KAFKELKVAENDYLEVTLHPVTKAFQDLXYSAVAS   91 (92)
T ss_dssp             HHHHHTTCCTHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999395988873146523566799999998714


No 35 
>>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide oxidoreductase; 2.00A {Vibrio cholerae} (A:63-146)
Probab=23.07  E-value=38  Score=12.82  Aligned_cols=37  Identities=16%  Similarity=0.146  Sum_probs=27.5

Q ss_pred             HHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             7899963999778524689987999999999999999
Q gi|254780161|r  199 LDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKY  235 (299)
Q Consensus       199 ~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~  235 (299)
                      .+++.++||+.+.+...-.+..+...+......++.+
T Consensus        45 ~~~~~~~Gvd~~~f~~a~~Sf~V~~~v~~a~~l~~~y   81 (84)
T 1bed_A           45 RQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDS   81 (84)
T ss_dssp             HHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf             9999985999999999982857899999999999980


No 36 
>>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens} (A:18-101)
Probab=20.88  E-value=42  Score=12.53  Aligned_cols=26  Identities=15%  Similarity=0.257  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             999999999774017898689899999
Q gi|254780161|r   77 LQWWKDIFESSTKGLIAESISPFSVEL  103 (299)
Q Consensus        77 L~~w~~~l~~~~~~~~~~~~~Pv~~aL  103 (299)
                      -+||+..+.+.+.....+ ....+.++
T Consensus        49 ~~WW~~vV~~tF~~~g~~-~~~~~~~~   74 (84)
T 3k1z_A           49 RQWWLDVVLQTFHLAGVQ-DAQAVAPI   74 (84)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCC-HHHHHHHH
T ss_conf             899999999999863898-09999999


No 37 
>>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} (A:65-148)
Probab=20.80  E-value=42  Score=12.52  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=23.6

Q ss_pred             HHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             89996399977852468998799999999999999
Q gi|254780161|r  200 DILGAVGLDRESFLSGQNSDRISLAIKIFAELGLK  234 (299)
Q Consensus       200 ~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~  234 (299)
                      +++.++||+.+.+...-.+..+...+......++.
T Consensus        46 ~~~~~~Gvd~~kf~~~~nSf~V~~~v~~a~~l~~~   80 (84)
T 1acv_A           46 DVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAAD   80 (84)
T ss_dssp             HHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             98776248999999997388999999999999998


No 38 
>>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase; 1.48A {Pseudomonas cellulosa} (A:148-487)
Probab=20.38  E-value=43  Score=12.46  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=45.0

Q ss_pred             CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             00004548577068999999999999985281387998859988806899999999999776036788258999999999
Q gi|254780161|r    2 VLKFLTKNTRKEEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWK   81 (299)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~   81 (299)
                      |+-++|-+++-=...+-....-..+++|-+.---|++..|..+..             +..+  ...+|...+.+ +||+
T Consensus        55 viNNVNa~~~lLt~~~l~~v~~iAd~fRpYGIkv~LS~nFasP~~-------------lGgL--~TaDPLD~~V~-~WW~  118 (340)
T 1gqi_A           55 VINNVNADPRVLSDQFLQKIAALADAFRPYGIKMYLSINFNSPRA-------------FGDV--DTADPLDPRVQ-QWWK  118 (340)
T ss_dssp             ECSCSSCCGGGGSHHHHHHHHHHHHHHGGGTCEEEEEECTTHHHH-------------TTSC--SCCCTTSHHHH-HHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC-------------CCCC--CCCCCCCHHHH-HHHH
T ss_conf             641545551566888899999999986423618999614467767-------------8987--66787887899-9998


Q ss_pred             HHHHHHHH
Q ss_conf             99997740
Q gi|254780161|r   82 DIFESSTK   89 (299)
Q Consensus        82 ~~l~~~~~   89 (299)
                      +..+++|.
T Consensus       119 ~~~~~iY~  126 (340)
T 1gqi_A          119 TRAQKIYS  126 (340)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             76566886


Done!