HHsearch results for GI: 254780161 and protein with PDBid: 3ipi_A
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=96.19 E-value=0.038 Score=32.12 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCH-
Q ss_conf 99999999985305888-8998999998644337999999984---03430---3455766889999998998872247-
Q gi|254780161|r 116 YFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQLP- 187 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~- 187 (299)
....+..|...|+.... ..+.+++..-++.-.|++..+++.+ ++..+ .........++|.|+|+.+=+.|+-
T Consensus 135 ~~~~~~~gq~~d~~~~~~~~~~~~y~~i~~~KT~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~ 214 (295)
T 3ipi_A 135 AGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLE 214 (295)
T ss_dssp HHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999666258874146678899999999989999999999999997379999999999999999999999999998548
Q ss_pred ----HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf ----87634887346789996399977852468998799999999999999999999644528999
Q gi|254780161|r 188 ----IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 188 ----~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
.|...|..-+|.-.+.. ... .+.+....+.++.+...|++.+..+|..
T Consensus 215 ~~~GkDl~~gk~Tlp~i~~~~------------~~~--~~~~~~~~~~~~~~~~~a~~~l~~l~~~ 266 (295)
T 3ipi_A 215 VVEGKESKFTSETLPHIYMKS------------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHC-------CCHHHHHTTT------------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCHHHCCCCCHHHHHHHH------------CCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 987870514872399999876------------087--9999999999999999999998637898