HHsearch results for GI: 254780161 and protein with PDBid: 3lmd_A
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=96.21 E-value=0.064 Score=30.60 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999985305888-8998999998644337999999984---03430---345576688999999899887224-
Q gi|254780161|r 115 QYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 115 ~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
.....++.|...|+.... ..+.+++..-+..-.|++..+++.+ ++..+ ......+..++|.|+|+.+=+.|+
T Consensus 167 ~~~~~~~~GQ~~dl~~~~~~~~~e~y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~ 246 (360)
T 3lmd_A 167 ETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87689887778987465666879999999999999999999999999829899999999999999999999877865312
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH----HHHCCC-CCH-HHHH---HH------HHHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977----852468-998-7999---99------9999999999999996
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE----SFLSGQ-NSD-RISL---AI------KIFAELGLKYLFKARE 241 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e----~l~~~~-~~~-~~~~---~~------~~~~~~A~~~l~~a~~ 241 (299)
+.|+..|.+-+|.=..-+.+-... +++.+. .++ .+.. ++ ......++.+.++|..
T Consensus 247 ~~~~~~GK~~g~Dl~eGK~Tlpvi~al~~~~~~~~~l~~~~~~~~~~~~~i~~i~~ll~~~ga~~~a~~~~~~~~~~A~~ 326 (360)
T 3lmd_A 247 SETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANA 326 (360)
T ss_dssp C--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 88544199644698769975799999985989999999998187899999999999999859799999999999999999
Q ss_pred HHHHCCHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 44528999-999999999999999999
Q gi|254780161|r 242 EMRYILPD-VFPAFIPVSITESVLKHA 267 (299)
Q Consensus 242 ~~~~lp~~-~r~~~l~~~~~~~~L~~l 267 (299)
.+..+|.. .+..+.. +...++++|
T Consensus 327 ~L~~lp~~~~r~~L~~--L~~~v~~Ri 351 (360)
T 3lmd_A 327 ELDRLPDSTVKEALRN--LATFTVKRV 351 (360)
T ss_dssp HHTTSCCSHHHHHHHH--HHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHH--HHHHHHHHC
T ss_conf 9856999789999999--999999978