HHsearch results for GI: 254780161 and protein with PDBid: 3mzv_A
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=93.36 E-value=0.38 Score=25.39 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999853058--888998999998644337999999984---03430---345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...|+.. ....+.+++...+..-.+++...++.+ ++... ......+..++|.|+|+.+=+.|+
T Consensus 147 ~~~~~~~Gq~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~l~~~~~~~~~~l~~~G~~lG~AFQI~DD~ld~~ 226 (341)
T 3mzv_A 147 ASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86776060079987502679989999999999999999999998410117998999999999999999999888876530
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH-----HHH-CCCCCH-HHHHHH---------HHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977-----852-468998-799999---------999999999999999
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE-----SFL-SGQNSD-RISLAI---------KIFAELGLKYLFKAR 240 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e-----~l~-~~~~~~-~~~~~~---------~~~~~~A~~~l~~a~ 240 (299)
+.|+..|+.-+|.-..-+.+-+.+ ++. .+..++ .+..++ ......++.+.++|.
T Consensus 227 ~d~~~~GK~~g~Dl~egk~Tlpli~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~~~a~~~~~~~~~~A~ 306 (341)
T 3mzv_A 227 GKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTAR 306 (341)
T ss_dssp ---------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 78666385527586569841999999986999989999999866899999999999999986989999999999999999
Q ss_pred HHHHHCCHH
Q ss_conf 644528999
Q gi|254780161|r 241 EEMRYILPD 249 (299)
Q Consensus 241 ~~~~~lp~~ 249 (299)
+.+..+|..
T Consensus 307 ~~L~~lp~s 315 (341)
T 3mzv_A 307 KALAKLPDH 315 (341)
T ss_dssp HHHTTSCCC
T ss_pred HHHHCCCCC
T ss_conf 998669997