Query gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 299
No_of_seqs 140 out of 1367
Neff 8.3
Searched_HMMs 23785
Date Mon May 23 02:23:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780161.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zco_A Dehydrosqualene synthas 100.0 0 0 420.1 33.9 280 13-296 6-289 (293)
2 1ezf_A Farnesyl-diphosphate fa 100.0 0 0 360.8 20.5 279 15-293 4-298 (340)
3 3n3d_A Geranylgeranyl pyrophos 96.4 0.052 2.2E-06 31.2 11.1 143 124-273 154-328 (335)
4 3lmd_A Geranylgeranyl pyrophos 96.2 0.064 2.7E-06 30.6 13.1 151 115-267 167-351 (360)
5 3ipi_A Geranyltranstransferase 96.2 0.038 1.6E-06 32.1 9.0 120 116-249 135-266 (295)
6 1ps1_A Pentalenene synthase; a 96.0 0.082 3.4E-06 29.9 21.3 174 36-211 52-250 (337)
7 2q80_A Geranylgeranyl pyrophos 95.2 0.16 6.6E-06 28.0 13.3 133 116-249 119-282 (301)
8 3lk5_A Geranylgeranyl pyrophos 94.0 0.3 1.2E-05 26.1 8.6 132 116-247 183-352 (380)
9 1wy0_A Geranylgeranyl pyrophos 93.5 0.35 1.5E-05 25.6 14.5 138 116-254 145-330 (342)
10 3mzv_A Decaprenyl diphosphate 93.4 0.38 1.6E-05 25.4 15.0 134 116-249 147-315 (341)
11 3oyr_A Trans-isoprenyl diphosp 92.6 0.47 2E-05 24.7 15.2 139 116-254 159-333 (345)
12 1v4e_A Octoprenyl-diphosphate 92.4 0.5 2.1E-05 24.5 13.9 86 117-202 136-235 (299)
13 2e8v_A Geranylgeranyl pyrophos 92.3 0.53 2.2E-05 24.4 8.7 86 116-201 139-245 (340)
14 3nf2_A Putative polyprenyl syn 92.0 0.57 2.4E-05 24.2 13.1 137 117-254 152-332 (352)
15 1uby_A FPS, farnesyl diphospha 90.2 0.83 3.5E-05 23.0 11.7 91 116-206 177-292 (367)
16 3pde_A Farnesyl-diphosphate sy 90.2 0.84 3.5E-05 23.0 11.1 108 121-250 158-283 (309)
17 3lom_A Geranyltranstransferase 89.7 0.91 3.8E-05 22.8 7.3 108 120-249 160-287 (313)
18 1yyq_A Trichodiene synthase; t 89.6 0.93 3.9E-05 22.7 16.9 166 37-213 76-259 (374)
19 3kb9_A EPI-isozizaene synthase 89.2 0.98 4.1E-05 22.6 21.7 172 37-211 93-292 (382)
20 3p8r_A Geranyltranstransferase 88.7 1.1 4.5E-05 22.3 11.4 106 132-249 173-286 (302)
21 1di1_A Aristolochene synthase; 88.6 1.1 4.5E-05 22.3 19.5 172 36-211 48-244 (300)
22 1rtr_A Geranyltranstransferase 88.6 1.1 4.6E-05 22.3 11.2 107 120-248 150-274 (301)
23 1rqj_A Geranyltranstransferase 87.6 1.2 5.2E-05 21.9 16.4 81 119-199 153-252 (299)
24 3p8l_A Geranyltranstransferase 85.2 1.6 6.9E-05 21.1 10.0 68 120-187 158-232 (302)
25 2qis_A Farnesyl pyrophosphate 79.8 2.6 0.00011 19.7 17.2 90 116-205 184-298 (374)
26 2azj_A Geranylgeranyl pyrophos 79.0 2.8 0.00012 19.5 9.4 65 117-186 144-213 (289)
27 3aqb_B Component B of hexapren 78.1 2.9 0.00012 19.4 16.1 131 119-249 141-307 (325)
28 3bny_A Aristolochene synthase; 77.0 3.1 0.00013 19.1 18.1 171 37-211 63-258 (320)
29 3dyh_A Farnesyl pyrophosphate 73.8 3.8 0.00016 18.6 13.8 88 118-205 189-312 (390)
30 3lsn_A Geranyltranstransferase 69.7 4.6 0.00019 18.0 11.6 109 130-250 165-281 (304)
31 2her_A Fragment, farnesyl pyro 65.0 5.7 0.00024 17.4 10.5 134 116-250 176-339 (368)
32 2ihi_A Pyrophosphate synthase; 63.7 6 0.00025 17.2 14.8 133 117-250 187-379 (395)
33 1n1b_A (+)-bornyl diphosphate 59.2 7.2 0.0003 16.7 19.2 205 37-254 275-512 (549)
34 3m0g_A Farnesyl diphosphate sy 54.4 8.6 0.00036 16.2 10.8 68 132-199 164-245 (297)
35 2ftz_A Geranyltranstransferase 53.5 8.8 0.00037 16.1 8.7 61 131-191 160-223 (284)
36 3npk_A Geranyltranstransferase 43.4 13 0.00053 15.0 6.9 71 120-190 147-224 (291)
37 3kra_B Geranyl diphosphate syn 35.6 16 0.00069 14.3 13.1 66 119-184 150-222 (274)
38 3n0f_A Isoprene synthase; terp 34.5 17 0.00072 14.1 19.6 204 38-254 280-514 (555)
39 1xg7_A Hypothetical protein; s 27.8 22 0.00093 13.4 13.3 193 14-232 13-210 (250)
40 1yhl_A Farnesyl pyrophosphate 27.0 23 0.00096 13.3 14.5 70 135-204 196-283 (362)
41 1wmw_A Geranylgeranyl diphosph 24.0 26 0.0011 12.9 23.0 130 116-245 138-304 (330)
No 1
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
Probab=100.00 E-value=0 Score=420.12 Aligned_cols=280 Identities=10% Similarity=0.093 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHHHHHHH
Q ss_conf 068999999999999985281387998859988806899999999999776036788258999---99999999997740
Q gi|254780161|r 13 EEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDM---RLQWWKDIFESSTK 89 (299)
Q Consensus 13 ~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~---rL~~w~~~l~~~~~ 89 (299)
..+++++|++||.+++|++++|||++++|||+++|++++++|+|||.+|||+|+..++..... ++++|..... .
T Consensus 6 ~~~~~~~~~~~C~~i~r~~~~sF~~a~~~Lp~~~r~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~~~l~~~~~~~~---~ 82 (293)
T 2zco_A 6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPY---E 82 (293)
T ss_dssp -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHCTT---S
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_conf 7766999999999999863966999998789999999999999999988630078966779999999999998677---6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 17898689899999999986189989999999999853058888998999998644337999999984034303455766
Q gi|254780161|r 90 GLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRV 169 (299)
Q Consensus 90 ~~~~~~~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~ 169 (299)
.....+.|||..+|.+++++++++++++.++|+||++|++.++|+|++||+.||++|||+||+|++.+++..+.....+.
T Consensus 83 ~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~l~~~il~~~~~~~~~~~ 162 (293)
T 2zco_A 83 YHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDV 162 (293)
T ss_dssp CCCCSSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 42688887999999999998499856899999999986243568999999999871302199999999615220027999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 88999999899887224787634887346789996399977852468998799999999999999999999644528999
Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 170 a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
|.++|.|+|+||||||+++|+++||+|||.|+|.+||++++++.++..++++++++.+++++|+.||.+|+.++..+|++
T Consensus 163 A~~lG~AlQltNiLRDi~eD~~~gR~YlP~e~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~lp~~ 242 (293)
T 2zco_A 163 ARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999715989977984288999988599999985576205899989999999999999999868758998
Q ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999-9999999999999996888724589868966799999999862
Q gi|254780161|r 250 VFPA-FIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIK 296 (299)
Q Consensus 250 ~r~~-~l~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~~~~ 296 (299)
.+++ .+++.+|..+|++|++++|+ |..|+.+|+++|.|++++...+
T Consensus 243 ~r~~v~~a~~~y~~il~~i~~~~~~-~~~R~~vs~~~K~~l~~~~~~~ 289 (293)
T 2zco_A 243 AQPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSK 289 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHH
T ss_conf 7899999999999999999938998-8789851799999999999998
No 2
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2
Probab=100.00 E-value=0 Score=360.79 Aligned_cols=279 Identities=8% Similarity=0.052 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 899999999999998528138799885998880689999999999977603678-825899999999999997740178-
Q gi|254780161|r 15 KIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTAR-NPITRDMRLQWWKDIFESSTKGLI- 92 (299)
Q Consensus 15 ~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~-~~~~~~~rL~~w~~~l~~~~~~~~- 92 (299)
..+++++++|.++++++|+|||+++++||+++|++++++|+|||.+|+|+|+.. ++......|++|++.+.+......
T Consensus 4 ~~l~~s~~~C~~il~~~SrSF~~a~~~Lp~~~R~av~~lYafcR~~DdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~ 83 (340)
T 1ezf_A 4 NSLSNSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME 83 (340)
T ss_dssp ----CHHHHHHHHHHHHCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 55899999999999965957999998789999999999999999845566389998899999999999998572212213
Q ss_pred -CCCCC-------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH-
Q ss_conf -98689-------899999999986189989999999999853058888998999998644337999999984034303-
Q gi|254780161|r 93 -AESIS-------PFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERY- 163 (299)
Q Consensus 93 -~~~~~-------Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~- 163 (299)
....+ ||..++....+.+..+...+.+.+++++.|+..++++|++||+.|||+|||+||+|++.+++..+.
T Consensus 84 ~~~~~~~ll~~~~~v~~~~~~l~~~~~~~i~~~~~~m~~~m~d~~~~~~~t~~dL~~Ycy~VAg~VG~~l~~l~~~~~~~ 163 (340)
T 1ezf_A 84 SKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFE 163 (340)
T ss_dssp CCSTTHHHHHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 58202888872539999999989873500577998972538987367679889999999875516999999995677765
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----4557668899999989988722478763488734678999639997785246899879999999999999999999
Q gi|254780161|r 164 ----SASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKA 239 (299)
Q Consensus 164 ----~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a 239 (299)
....+.+.++|.|+|+||||||+++|+++||+|||.|+|.+||++++++.+++.+++++.++.+++.+|+.||++|
T Consensus 164 ~~~~~~~~~~a~~lG~alQltNilRD~~eD~~~gR~ylP~e~l~~~g~~~~dl~~~~~~~~~~~~~~~l~~~A~~~~~~a 243 (340)
T 1ezf_A 164 DPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDV 243 (340)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30068899999999999999989983399995896568889998839999987386467789999999999999999999
Q ss_pred HHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9644528999999999-99999999999996888724589868966799999999
Q gi|254780161|r 240 REEMRYILPDVFPAFI-PVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSS 293 (299)
Q Consensus 240 ~~~~~~lp~~~r~~~l-~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~ 293 (299)
..++..+|.+.+..|. ....+..+.-++.++|+++|++++.++...+..++.++
T Consensus 244 ~~~~~~lp~~~~~~f~~~~~~~~~~tl~~~~~~~~~~~~~vkisr~~~~~l~~~~ 298 (340)
T 1ezf_A 244 ITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDA 298 (340)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCC----------CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHH
T ss_conf 9999878921489999999999999999997391530798476699999999982
No 3
>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis}
Probab=96.38 E-value=0.052 Score=31.19 Aligned_cols=143 Identities=12% Similarity=0.042 Sum_probs=81.4
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-----------
Q ss_conf 9853058888998999998644337999999984---03430---345576688999999899887224-----------
Q gi|254780161|r 124 HFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL----------- 186 (299)
Q Consensus 124 ~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi----------- 186 (299)
...|.....-.+++++..+...-.+++..+++.+ ++..+ .........++|.|+|+.+=+.|+
T Consensus 154 ~~~~~~~~~~~~~~~y~~~i~~KT~~l~~~~~~~ga~~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~~~~GK~~ 233 (335)
T 3n3d_A 154 HQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPV 233 (335)
T ss_dssp HHHHTTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSCCHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCH
T ss_conf 99875027788999999999986888999999987741024257779999987777889887567653248877869864
Q ss_pred HHHHHCCCCCCCHHHHHHCCCCHHH--HH-C-CCCCH-HH---HHH------HHHHHHHHHHHHHHHHHHHHHCCHH-HH
Q ss_conf 7876348873467899963999778--52-4-68998-79---999------9999999999999999644528999-99
Q gi|254780161|r 187 PIHYHRGQLYFPLDILGAVGLDRES--FL-S-GQNSD-RI---SLA------IKIFAELGLKYLFKAREEMRYILPD-VF 251 (299)
Q Consensus 187 ~~d~~~gr~yLP~~~l~~~gv~~e~--l~-~-~~~~~-~~---~~~------~~~~~~~A~~~l~~a~~~~~~lp~~-~r 251 (299)
+.|+..|++-+|.=..-+.+ +.+. +. . ...++ .+ .++ +......++.|.++|.+.+..+|.. .+
T Consensus 234 g~Dl~egK~Tlpil~ale~~-~~~~~~~l~~~~~~~~~~i~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~~~~k 312 (335)
T 3n3d_A 234 LEDLRSGVYSLPLLLSLSHA-PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGSAQ 312 (335)
T ss_dssp HHHHHHTCCCHHHHHHGGGC-HHHHHHHHSSGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHC-CHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 13565695279999998729-89999999746389999999999999987969999999999999999998679998899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999968887
Q gi|254780161|r 252 PAFIPVSITESVLKHAQNHGFK 273 (299)
Q Consensus 252 ~~~l~~~~~~~~L~~l~~~~~~ 273 (299)
..+. .+.+.+-+++|.
T Consensus 313 ~~L~------~l~~~vi~R~~~ 328 (335)
T 3n3d_A 313 QSLE------QLTRLLLRRDHE 328 (335)
T ss_dssp HHHH------HHHHHHHTC---
T ss_pred HHHH------HHHHHHHHCCCC
T ss_conf 9999------999999868999
No 4
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum}
Probab=96.21 E-value=0.064 Score=30.60 Aligned_cols=151 Identities=13% Similarity=0.112 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999985305888-8998999998644337999999984---03430---345576688999999899887224-
Q gi|254780161|r 115 QYFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 115 ~~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
.....++.|...|+.... ..+.+++..-+..-.|++..+++.+ ++..+ ......+..++|.|+|+.+=+.|+
T Consensus 167 ~~~~~~~~GQ~~dl~~~~~~~~~e~y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~ 246 (360)
T 3lmd_A 167 ETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87689887778987465666879999999999999999999999999829899999999999999999999877865312
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH----HHHCCC-CCH-HHHH---HH------HHHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977----852468-998-7999---99------9999999999999996
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE----SFLSGQ-NSD-RISL---AI------KIFAELGLKYLFKARE 241 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e----~l~~~~-~~~-~~~~---~~------~~~~~~A~~~l~~a~~ 241 (299)
+.|+..|.+-+|.=..-+.+-... +++.+. .++ .+.. ++ ......++.+.++|..
T Consensus 247 ~~~~~~GK~~g~Dl~eGK~Tlpvi~al~~~~~~~~~l~~~~~~~~~~~~~i~~i~~ll~~~ga~~~a~~~~~~~~~~A~~ 326 (360)
T 3lmd_A 247 SETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANA 326 (360)
T ss_dssp C--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 88544199644698769975799999985989999999998187899999999999999859799999999999999999
Q ss_pred HHHHCCHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 44528999-999999999999999999
Q gi|254780161|r 242 EMRYILPD-VFPAFIPVSITESVLKHA 267 (299)
Q Consensus 242 ~~~~lp~~-~r~~~l~~~~~~~~L~~l 267 (299)
.+..+|.. .+..+.. +...++++|
T Consensus 327 ~L~~lp~~~~r~~L~~--L~~~v~~Ri 351 (360)
T 3lmd_A 327 ELDRLPDSTVKEALRN--LATFTVKRV 351 (360)
T ss_dssp HHTTSCCSHHHHHHHH--HHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHH--HHHHHHHHC
T ss_conf 9856999789999999--999999978
No 5
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=96.19 E-value=0.038 Score=32.12 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCH-
Q ss_conf 99999999985305888-8998999998644337999999984---03430---3455766889999998998872247-
Q gi|254780161|r 116 YFLDMIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQLP- 187 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~- 187 (299)
....+..|...|+.... ..+.+++..-++.-.|++..+++.+ ++..+ .........++|.|+|+.+=+.|+-
T Consensus 135 ~~~~~~~gq~~d~~~~~~~~~~~~y~~i~~~KT~~lf~~a~~~ga~lag~~~~~~~~l~~~g~~lG~afQI~DD~lD~~~ 214 (295)
T 3ipi_A 135 AGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLE 214 (295)
T ss_dssp HHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999666258874146678899999999989999999999999997379999999999999999999999999998548
Q ss_pred ----HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf ----87634887346789996399977852468998799999999999999999999644528999
Q gi|254780161|r 188 ----IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 188 ----~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
.|...|..-+|.-.+.. ... .+.+....+.++.+...|++.+..+|..
T Consensus 215 ~~~GkDl~~gk~Tlp~i~~~~------------~~~--~~~~~~~~~~~~~~~~~a~~~l~~l~~~ 266 (295)
T 3ipi_A 215 VVEGKESKFTSETLPHIYMKS------------TSK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHC-------CCHHHHHTTT------------SCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCHHHCCCCCHHHHHHHH------------CCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 987870514872399999876------------087--9999999999999999999998637898
No 6
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=95.98 E-value=0.082 Score=29.88 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=109.3
Q ss_pred HHHHHHCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-
Q ss_conf 79988599888068---99999999999776036788258999999999999977401789868989999999998618-
Q gi|254780161|r 36 YLACLLSPPLYRIS---LSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD- 111 (299)
Q Consensus 36 y~a~~~lP~~~R~~---~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~- 111 (299)
.+++.+.|.-..+. +.-+.+|.-..||..|+.... ....++...+.+.....+....+.+|+..++.+...+..
T Consensus 52 ~~~a~~~P~a~~~~L~l~a~~~~w~f~~DD~~D~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~~~dl~~r~~~ 129 (337)
T 1ps1_A 52 DLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGE--NPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCE 129 (337)
T ss_dssp HHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGG--CHHHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999778999999999999999998842220465656--8999999999999743588876431899999999999997
Q ss_pred -CCHH-------HHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHH--CCCC------CHHHHHHHHH
Q ss_conf -9989-------99999999985305----8888998999998644337999999984--0343------0345576688
Q gi|254780161|r 112 -LPNQ-------YFLDMIEAHFFDSY----NDSIFDCKQFEHYAFRISSRLIHLATMI--LDSE------RYSASLRVIK 171 (299)
Q Consensus 112 -l~~~-------~l~~lid~~~~Dl~----~~~~~t~~~L~~Y~~~~ag~vg~l~~~i--~~~~------~~~~~~~~a~ 171 (299)
.+.. .+..++++..+... ...++|+++...+-..+.|....+.+-- .|.. ..+......+
T Consensus 130 ~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~~~~~~l~~ 209 (337)
T 1ps1_A 130 GMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQ 209 (337)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH
T ss_conf 63999999999999999999999999750488899999999999971236899999999869988999984812599999
Q ss_pred HHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHHHCCCCHHH
Q ss_conf 999999899887224787634887-3467899963999778
Q gi|254780161|r 172 YAGIAQFIGQLICQLPIHYHRGQL-YFPLDILGAVGLDRES 211 (299)
Q Consensus 172 ~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~~~gv~~e~ 211 (299)
..+....++|=+-..+.+.+.|.. -+-.-++..+|++.++
T Consensus 210 ~~~~~~~l~NDl~S~~KE~~~g~~~N~V~vl~~~~g~s~ee 250 (337)
T 1ps1_A 210 IAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR 250 (337)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHH
T ss_conf 99999989888888888876434641999998637989999
No 7
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=95.19 E-value=0.16 Score=27.97 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 999999999853058---888998999998644337999999984---03430345576688999999899887224---
Q gi|254780161|r 116 YFLDMIEAHFFDSYN---DSIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQL--- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~---~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi--- 186 (299)
.+..+..|...|+.. ....+++++..-+..-.|++..+++.+ ++. ..+....+..++|.|+|+.+=+.|+
T Consensus 119 ~~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf~~~~~~ga~~~~-~~e~l~~~g~~lG~afQi~DD~lD~~~~ 197 (301)
T 2q80_A 119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKEDLKPLLNTLGLFFQIRDDYANLHSK 197 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCSCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999987050458776402566769999999987269999999888776423-5689999999999999865887860188
Q ss_pred --------HHHHHCCCCCCCHHHHHHCCCCH---HHHHC-CCCCHH-HHHHHH---------HHHHHHHHHHHHHHHHHH
Q ss_conf --------78763488734678999639997---78524-689987-999999---------999999999999996445
Q gi|254780161|r 187 --------PIHYHRGQLYFPLDILGAVGLDR---ESFLS-GQNSDR-ISLAIK---------IFAELGLKYLFKAREEMR 244 (299)
Q Consensus 187 --------~~d~~~gr~yLP~~~l~~~gv~~---e~l~~-~~~~~~-~~~~~~---------~~~~~A~~~l~~a~~~~~ 244 (299)
+.|+..|+.-+|.=..-+..-.. ..+.. ...++. ...++. ..-..++.+..+|...+.
T Consensus 198 ~~~~GK~~g~Dl~~gk~Tlpvi~al~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~~~~~~~A~~~l~ 277 (301)
T 2q80_A 198 EYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQID 277 (301)
T ss_dssp ------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53348871118776983099999988298379999998566799899999999999869599999999999999999997
Q ss_pred HCCHH
Q ss_conf 28999
Q gi|254780161|r 245 YILPD 249 (299)
Q Consensus 245 ~lp~~ 249 (299)
.+|..
T Consensus 278 ~l~~~ 282 (301)
T 2q80_A 278 ARGGN 282 (301)
T ss_dssp HTTCC
T ss_pred HCCCC
T ss_conf 09999
No 8
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum}
Probab=93.99 E-value=0.3 Score=26.10 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHCCCC--CCCCHHHHHH-HHHHHHHHHHHHH---HHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999998530588--8899899999-8644337999999---9840343---0345576688999999899887224
Q gi|254780161|r 116 YFLDMIEAHFFDSYND--SIFDCKQFEH-YAFRISSRLIHLA---TMILDSE---RYSASLRVIKYAGIAQFIGQLICQL 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~--~~~t~~~L~~-Y~~~~ag~vg~l~---~~i~~~~---~~~~~~~~a~~lG~A~ql~niLRdi 186 (299)
....++.|...|+... .-.+.+.... -.+.+++.+...+ ..++... .......+..++|.|+|+.+=+.|+
T Consensus 183 ~~~~~~~Gq~~d~~~~~~~~~~~~~~~~~~~~kta~~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lGiaFQI~DD~lD~ 262 (380)
T 3lk5_A 183 MRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGV 262 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888500568887512431038999999998874699999999887653499999999999999999999998888763
Q ss_pred -----------HHHHHCCCCCCCHHHHHHCC--CCHHH---HH---CCCCCHH-H---HH------HHHHHHHHHHHHHH
Q ss_conf -----------78763488734678999639--99778---52---4689987-9---99------99999999999999
Q gi|254780161|r 187 -----------PIHYHRGQLYFPLDILGAVG--LDRES---FL---SGQNSDR-I---SL------AIKIFAELGLKYLF 237 (299)
Q Consensus 187 -----------~~d~~~gr~yLP~~~l~~~g--v~~e~---l~---~~~~~~~-~---~~------~~~~~~~~A~~~l~ 237 (299)
+.|+..|++-+|.-..-+.. -..+. +. ....++. + .+ .+......++.+.+
T Consensus 263 ~g~~~~~GK~~~~Dl~egK~Tlp~i~ale~a~~~~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~ga~~~~~~~~~~~~~ 342 (380)
T 3lk5_A 263 FGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTE 342 (380)
T ss_dssp HSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 08985469974378757972199999998587513999999997257899999999999999987979999999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9996445289
Q gi|254780161|r 238 KAREEMRYIL 247 (299)
Q Consensus 238 ~a~~~~~~lp 247 (299)
+|...+..+|
T Consensus 343 ~A~~~L~~l~ 352 (380)
T 3lk5_A 343 SGLAHLDDVD 352 (380)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHHCCC
T ss_conf 9999975599
No 9
>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3}
Probab=93.53 E-value=0.35 Score=25.57 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 9999999998530588--88998999998644337999999984---03430---345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYND--SIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~--~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...|+... .-.+++++..-++.-.|++..+++.+ +++.+ .........++|.|+|+.+=+.|+
T Consensus 145 ~~~~~~~Gq~~dl~~~~~~~~~~~~y~~ii~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~ 224 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88898762656654014689999999999999999999999999999839999999999999999999999855641023
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHHH------HHCCCC-------------CHHHHH---------HHHHH
Q ss_conf ----------7876348873467899963999778------524689-------------987999---------99999
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRES------FLSGQN-------------SDRISL---------AIKIF 228 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e~------l~~~~~-------------~~~~~~---------~~~~~ 228 (299)
+.|+..|+.-+|.-..-+.+ ++.+ +..... ...+.. .++.-
T Consensus 225 ~~~~~~GK~~g~Dl~~gk~Tlp~i~al~~~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ga~~~a 303 (342)
T 1wy0_A 225 ADEKKLGKPVGSDIRKGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA 303 (342)
T ss_dssp SCHHHHTSCSCHHHHHTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 887760997564100276309999999859-9999999999873533116654323311589999999999986979999
Q ss_pred HHHHHHHHHHHHHHHHHCCHH-HHHHH
Q ss_conf 999999999999644528999-99999
Q gi|254780161|r 229 AELGLKYLFKAREEMRYILPD-VFPAF 254 (299)
Q Consensus 229 ~~~A~~~l~~a~~~~~~lp~~-~r~~~ 254 (299)
...++.+.++|.+.+..+|.. .+..+
T Consensus 304 ~~~a~~~~~~A~~~L~~lp~~~~k~~L 330 (342)
T 1wy0_A 304 AEIAKDMIKKANEALRILPKSKARMDL 330 (342)
T ss_dssp HHHHHHHHHHHHTTGGGSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999998669997899999
No 10
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=93.36 E-value=0.38 Score=25.39 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999853058--888998999998644337999999984---03430---345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...|+.. ....+.+++...+..-.+++...++.+ ++... ......+..++|.|+|+.+=+.|+
T Consensus 147 ~~~~~~~Gq~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~l~~~~~~~~~~l~~~G~~lG~AFQI~DD~ld~~ 226 (341)
T 3mzv_A 147 ASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86776060079987502679989999999999999999999998410117998999999999999999999888876530
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH-----HHH-CCCCCH-HHHHHH---------HHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977-----852-468998-799999---------999999999999999
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE-----SFL-SGQNSD-RISLAI---------KIFAELGLKYLFKAR 240 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e-----~l~-~~~~~~-~~~~~~---------~~~~~~A~~~l~~a~ 240 (299)
+.|+..|+.-+|.-..-+.+-+.+ ++. .+..++ .+..++ ......++.+.++|.
T Consensus 227 ~d~~~~GK~~g~Dl~egk~Tlpli~al~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~~~a~~~~~~~~~~A~ 306 (341)
T 3mzv_A 227 GKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTAR 306 (341)
T ss_dssp ---------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 78666385527586569841999999986999989999999866899999999999999986989999999999999999
Q ss_pred HHHHHCCHH
Q ss_conf 644528999
Q gi|254780161|r 241 EEMRYILPD 249 (299)
Q Consensus 241 ~~~~~lp~~ 249 (299)
+.+..+|..
T Consensus 307 ~~L~~lp~s 315 (341)
T 3mzv_A 307 KALAKLPDH 315 (341)
T ss_dssp HHHTTSCCC
T ss_pred HHHHCCCCC
T ss_conf 998669997
No 11
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=92.65 E-value=0.47 Score=24.71 Aligned_cols=139 Identities=14% Similarity=0.071 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCC---HHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 999999999853058--88899899999864433799999998---403430---345576688999999899887224-
Q gi|254780161|r 116 YFLDMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATM---ILDSER---YSASLRVIKYAGIAQFIGQLICQL- 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~---~~~~~~~a~~lG~A~ql~niLRdi- 186 (299)
....+..|...+... ....+++++..-++.-.|++...++. +++..+ .........++|.|+||.+=+-|+
T Consensus 159 ~~~~~~~G~~~~~~~~~~~~~~~~~yl~ii~~KTa~L~~~~~~~ga~~~~~~~~~~~~l~~~G~~lG~AFQI~DDllD~~ 238 (345)
T 3oyr_A 159 ASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYG 238 (345)
T ss_dssp HHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999731068877622777668999999999874899999987998837999999999988899999999987654134
Q ss_pred ----------HHHHHCCCCCCCHHHHHHCCCCHH-H----HHC-CCC-CH---HHHH------HHHHHHHHHHHHHHHHH
Q ss_conf ----------787634887346789996399977-8----524-689-98---7999------99999999999999999
Q gi|254780161|r 187 ----------PIHYHRGQLYFPLDILGAVGLDRE-S----FLS-GQN-SD---RISL------AIKIFAELGLKYLFKAR 240 (299)
Q Consensus 187 ----------~~d~~~gr~yLP~~~l~~~gv~~e-~----l~~-~~~-~~---~~~~------~~~~~~~~A~~~l~~a~ 240 (299)
+.|+..|.+-+|.=..-+..-+.+ . +.. ... .+ .+.+ .+......++.|.++|.
T Consensus 239 ~~~~~~GK~~g~Dl~egk~Tlp~i~ale~~~~~~~~~l~~~~~~~~~~~~~~~~i~~lv~~~g~i~~a~~~a~~~~~~A~ 318 (345)
T 3oyr_A 239 GATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAK 318 (345)
T ss_dssp ------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 34676277754235249722999999986999999999998737679999999999999986989999999999999999
Q ss_pred HHHHHCCHH-HHHHH
Q ss_conf 644528999-99999
Q gi|254780161|r 241 EEMRYILPD-VFPAF 254 (299)
Q Consensus 241 ~~~~~lp~~-~r~~~ 254 (299)
+.+..+|.. .+..+
T Consensus 319 ~~L~~lp~s~~k~~L 333 (345)
T 3oyr_A 319 AALAMFPANDWREAL 333 (345)
T ss_dssp HTTTTSCSSHHHHHH
T ss_pred HHHHCCCCCHHHHHH
T ss_conf 998669998899999
No 12
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=92.44 E-value=0.5 Score=24.54 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH-----
Q ss_conf 99999999853058-88899899999864433799999998---4034303455766889999998998872247-----
Q gi|254780161|r 117 FLDMIEAHFFDSYN-DSIFDCKQFEHYAFRISSRLIHLATM---ILDSERYSASLRVIKYAGIAQFIGQLICQLP----- 187 (299)
Q Consensus 117 l~~lid~~~~Dl~~-~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~----- 187 (299)
...+..|...|+.. ....|.+++..-+..-.|++..+++. ++++...+.......++|.|+|+.+=+.|+-
T Consensus 136 ~~~~~~Gq~~d~~~~~~~~t~~~y~~ii~~KTa~lf~~~~~~gai~ag~~~~~l~~~g~~lG~afQi~DD~lD~~g~~~~ 215 (299)
T 1v4e_A 136 IGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMDFAGMEKI 215 (299)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 43003578788872279999999999988621012631046777754761668999999999999976998973528864
Q ss_pred -----HHHHCCCCCCCHHHH
Q ss_conf -----876348873467899
Q gi|254780161|r 188 -----IHYHRGQLYFPLDIL 202 (299)
Q Consensus 188 -----~d~~~gr~yLP~~~l 202 (299)
.|+..|++-+|.-..
T Consensus 216 GK~~g~Dl~~gk~T~pii~a 235 (299)
T 1v4e_A 216 GKDGFLDLKNGVASFPLVTA 235 (299)
T ss_dssp CTTSSCCCTTTTCCHHHHHH
T ss_pred CCCCCHHHHCCCCHHHHHHH
T ss_conf 99510087679730999999
No 13
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=92.27 E-value=0.53 Score=24.40 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHC---CCC--CHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999985305-----88889989999986443379999999840---343--034557668899999989988722
Q gi|254780161|r 116 YFLDMIEAHFFDSY-----NDSIFDCKQFEHYAFRISSRLIHLATMIL---DSE--RYSASLRVIKYAGIAQFIGQLICQ 185 (299)
Q Consensus 116 ~l~~lid~~~~Dl~-----~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~~--~~~~~~~~a~~lG~A~ql~niLRd 185 (299)
.+..+..|...|+. .....+++++..-+..-.|++..+++.+. ++. ..........++|.|+|+.+=+.|
T Consensus 139 ~~~~~~~GQ~lDl~~~~~~~~~~~t~e~Y~~ii~~KTa~Lf~~a~~~ga~lag~~~~~~~l~~~g~~lGiaFQI~DD~lD 218 (340)
T 2e8v_A 139 ELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLN 218 (340)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 01444235320334331025676779999999998879999999999998613303316899999999999803325655
Q ss_pred C-----------HHHHHCCCCCCCHHH
Q ss_conf 4-----------787634887346789
Q gi|254780161|r 186 L-----------PIHYHRGQLYFPLDI 201 (299)
Q Consensus 186 i-----------~~d~~~gr~yLP~~~ 201 (299)
+ +.|+..|+..+|.=.
T Consensus 219 ~~~d~~~~GK~~~~Dl~egK~Tlpvi~ 245 (340)
T 2e8v_A 219 LKDFQMSSEKGFAEDITEGKLSFPIVH 245 (340)
T ss_dssp HHC-----CCCTTHHHHTTCCCHHHHH
T ss_pred CCCCHHHCCCCCCHHHHCCCCCHHHHH
T ss_conf 039853349976528876964299999
No 14
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=91.97 E-value=0.57 Score=24.17 Aligned_cols=137 Identities=14% Similarity=0.034 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 9999999985305--8888998999998644337999999984---03430---345576688999999899887224--
Q gi|254780161|r 117 FLDMIEAHFFDSY--NDSIFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQL-- 186 (299)
Q Consensus 117 l~~lid~~~~Dl~--~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi-- 186 (299)
...+..|...|+. .....+.+++..-+..-.|++..+++.+ ++..+ .........++|.|+|+.+=+.|+
T Consensus 152 ~~~~~~gq~~d~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~~a~~~~~~~~~l~~~g~~lGiaFQi~DDilD~~~ 231 (352)
T 3nf2_A 152 SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWG 231 (352)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 03122530699987760235699999999867899999999987754126599999999999999999986343442038
Q ss_pred ---------HHHHHCCCCCCCHHHHHHCCCCHHH-----HHCC--------CCCH-HHHHH---------HHHHHHHHHH
Q ss_conf ---------7876348873467899963999778-----5246--------8998-79999---------9999999999
Q gi|254780161|r 187 ---------PIHYHRGQLYFPLDILGAVGLDRES-----FLSG--------QNSD-RISLA---------IKIFAELGLK 234 (299)
Q Consensus 187 ---------~~d~~~gr~yLP~~~l~~~gv~~e~-----l~~~--------~~~~-~~~~~---------~~~~~~~A~~ 234 (299)
+.|+..|+.-+|.=..-+.+ ++++ ++.+ ..++ .+..+ ++.....++.
T Consensus 232 ~~~~~GK~~g~Dl~egK~Tlpvi~al~~~-~~~~k~l~~il~~~~~~~~~~~~~~~~i~~~~~li~~~gai~~~~~~a~~ 310 (352)
T 3nf2_A 232 DPDATGKQTWSDLRQRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARR 310 (352)
T ss_dssp CHHHHSSCTTHHHHTTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHCCCCCCCHHCCCCHHHHHHHHHHC-CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 83675981365052495369999999819-88889999998511123343448999999999999987989999999999
Q ss_pred HHHHHHHHHHHCC--HHHHHHH
Q ss_conf 9999996445289--9999999
Q gi|254780161|r 235 YLFKAREEMRYIL--PDVFPAF 254 (299)
Q Consensus 235 ~l~~a~~~~~~lp--~~~r~~~ 254 (299)
+.++|.+.+..+| ...+..+
T Consensus 311 ~~~~A~~~L~~l~~~~~~k~~L 332 (352)
T 3nf2_A 311 QHTIAIEALDAVDMPDRVRDRF 332 (352)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999984599997999999
No 15
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=90.20 E-value=0.83 Score=23.05 Aligned_cols=91 Identities=5% Similarity=-0.076 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHHHH--H---HHHHHHCCCCC---HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985305888-------899899999864433799--9---99998403430---345576688999999899
Q gi|254780161|r 116 YFLDMIEAHFFDSYNDS-------IFDCKQFEHYAFRISSRL--I---HLATMILDSER---YSASLRVIKYAGIAQFIG 180 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~~-------~~t~~~L~~Y~~~~ag~v--g---~l~~~i~~~~~---~~~~~~~a~~lG~A~ql~ 180 (299)
....+..|...|+...+ ..+++++..-+..-.+.. . .+.+.+.+..+ .........++|.|+|+.
T Consensus 177 ~~~~~~~GQ~lDl~~~~~~~~~~~~~t~~~y~~ii~~KTa~ls~~~~~~~~~~~~g~~~~~~~~~l~~~g~~lG~aFQI~ 256 (367)
T 1uby_A 177 TAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQ 256 (367)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888999999997312444454327899999999998888888999998733222220377877765530005767731
Q ss_pred HHHHCC----------HHHHHCCCCCCCHHHHHHCC
Q ss_conf 887224----------78763488734678999639
Q gi|254780161|r 181 QLICQL----------PIHYHRGQLYFPLDILGAVG 206 (299)
Q Consensus 181 niLRdi----------~~d~~~gr~yLP~~~l~~~g 206 (299)
+=+-|+ +.|+..|++-+|.-..-+.+
T Consensus 257 DD~lD~~gd~~~~gk~g~Di~egK~Tlpvi~al~~~ 292 (367)
T 1uby_A 257 DDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV 292 (367)
T ss_dssp HHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHCCCCCHHHCCCHHHHHHHHHHHC
T ss_conf 467660289666198553765795259999999849
No 16
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=90.16 E-value=0.84 Score=23.03 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=62.1
Q ss_pred HHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHC---CCC---CHHHHHHHHHHHHHHHHHHHHHHCCH------
Q ss_conf 9999853058-8889989999986443379999999840---343---03455766889999998998872247------
Q gi|254780161|r 121 IEAHFFDSYN-DSIFDCKQFEHYAFRISSRLIHLATMIL---DSE---RYSASLRVIKYAGIAQFIGQLICQLP------ 187 (299)
Q Consensus 121 id~~~~Dl~~-~~~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~~---~~~~~~~~a~~lG~A~ql~niLRdi~------ 187 (299)
+.+...|... ....+.+++...+..-.|++...++.+. +.. .......+..++|.|+|+.+=+.|+-
T Consensus 158 ~~~~~~d~~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~ 237 (309)
T 3pde_A 158 VAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEM 237 (309)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 84520111001011139999999998888888999999999816618889999987776566788589887623897886
Q ss_pred -----HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf -----876348873467899963999778524689987999999999999999999996445289999
Q gi|254780161|r 188 -----IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDV 250 (299)
Q Consensus 188 -----~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~ 250 (299)
.|+..|+.-+|.-. .+..--...+.++.++.+.+..+|...
T Consensus 238 GK~~g~Dl~~gK~Tlp~i~----------------------~l~~a~~~~~~~~~~a~~~l~~~~~~~ 283 (309)
T 3pde_A 238 GKATQKDADEAKNTYPGKL----------------------GLIGANQALIDTIHSGQAALQGLPTST 283 (309)
T ss_dssp -------CTTTSSSHHHHH----------------------CHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred CCCCCHHHHCCCCCHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9982315672966299999----------------------999999999999999999998589975
No 17
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=89.72 E-value=0.91 Score=22.79 Aligned_cols=108 Identities=14% Similarity=0.001 Sum_probs=59.9
Q ss_pred HHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHH----HCCCCCH---HHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 9999985305--888899899999864433799999998----4034303---45576688999999899887224----
Q gi|254780161|r 120 MIEAHFFDSY--NDSIFDCKQFEHYAFRISSRLIHLATM----ILDSERY---SASLRVIKYAGIAQFIGQLICQL---- 186 (299)
Q Consensus 120 lid~~~~Dl~--~~~~~t~~~L~~Y~~~~ag~vg~l~~~----i~~~~~~---~~~~~~a~~lG~A~ql~niLRdi---- 186 (299)
+..+...|+. .....+.+++..-...-.|.+...++. +.+..+. ........++|.|+|+.+=+.|+
T Consensus 160 ~~~g~~~d~~~~~~~~~~~~~y~~i~~~KT~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~ 239 (313)
T 3lom_A 160 MVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPT 239 (313)
T ss_dssp HHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH
T ss_conf 21440467777740468899999999985377988779999998443227899999999999998802321421024898
Q ss_pred -------HHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf -------787634887346789996399977852468998799999999999999999999644528999
Q gi|254780161|r 187 -------PIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 187 -------~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
+.|+..|++-+|.- + .++.--+..+.++..+...++..+..
T Consensus 240 ~~~GK~~g~Di~egK~T~~~i----~------------------~~~~a~~~~~~~~~~~~~~l~~~~~~ 287 (313)
T 3lom_A 240 QILGKGRSSDQANQKTTFATL----F------------------NKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp --------------CCCHHHH----S------------------CHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred HHHCCCCCHHHHCCCCHHHHH----H------------------HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 886998112777597169999----9------------------99987999999999999987757821
No 18
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=89.55 E-value=0.93 Score=22.71 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=96.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC--CH
Q ss_conf 9988599888068999999999997760367882589999999999999774017898689899999999986189--98
Q gi|254780161|r 37 LACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDL--PN 114 (299)
Q Consensus 37 ~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~l--~~ 114 (299)
++-...|.+.+..+...+.|.-.+||..|+..+ .++-|.+.+ ..|. ++.||+...+.+...+..- ++
T Consensus 76 y~yP~~~~e~l~~ia~~t~~lf~lDD~~de~~~------~l~~f~~~L---~~g~--~~~~Pl~~~~~dll~~~~~~~gp 144 (374)
T 1yyq_A 76 YSWAKVSKECMADLSIHYTYTLVLDDSKDDPYP------TMVNYFDDL---QAGR--EQAHPWWALVNEHFPNVLRHFGP 144 (374)
T ss_dssp HHSTTSCHHHHHHHHHHHHHHHHHTTCCSCSHH------HHTTHHHHH---HHTC--CCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHEECCCCCCCCH------HHHHHHHHH---HCCC--CCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 857899999999999999998503464446527------799999998---5599--99867999999999999977598
Q ss_pred H-------HHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHH---HHHHHHHHHHHH
Q ss_conf 9-------9999999998530588-8899899999864433799999998403430---345576---688999999899
Q gi|254780161|r 115 Q-------YFLDMIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMILDSER---YSASLR---VIKYAGIAQFIG 180 (299)
Q Consensus 115 ~-------~l~~lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~---~~~~~~---~a~~lG~A~ql~ 180 (299)
. .+..++++-.+..... .+++..++-.|-..+.|.-...++-++.... .....+ +...+.....++
T Consensus 145 ~~~~~ii~st~~f~~a~~~E~~n~~~~p~~~~Y~e~RR~~sG~~~~~al~~f~~~~~p~~~~~~~~~~~i~~~~~~~~~~ 224 (374)
T 1yyq_A 145 FCSLNLIRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWV 224 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHCHHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998984388999789889998726788999999865305983888888999999999999987
Q ss_pred HHHHCCHHHH-HCC-CCCCCHHHHHHCCCCHHHHH
Q ss_conf 8872247876-348-87346789996399977852
Q gi|254780161|r 181 QLICQLPIHY-HRG-QLYFPLDILGAVGLDRESFL 213 (299)
Q Consensus 181 niLRdi~~d~-~~g-r~yLP~~~l~~~gv~~e~l~ 213 (299)
|=+-...... ..| ..-+....+..+|++.++-+
T Consensus 225 NDi~S~~KE~~~~~~~~n~v~~~a~~~g~s~~eAl 259 (374)
T 1yyq_A 225 NDLMSFYKEFDDERDQISLVKNYVVSDEISLHEAL 259 (374)
T ss_dssp HHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 33665667864267650099999998297999999
No 19
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=89.22 E-value=0.98 Score=22.55 Aligned_cols=172 Identities=11% Similarity=0.024 Sum_probs=98.4
Q ss_pred HHHHHCCHHHHHH---HHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHH
Q ss_conf 9988599888068---9999999999977603678--825899999999999997740--17898689899999999986
Q gi|254780161|r 37 LACLLSPPLYRIS---LSFLYYFHTELMRVRDTAR--NPITRDMRLQWWKDIFESSTK--GLIAESISPFSVELLSIVRQ 109 (299)
Q Consensus 37 ~a~~~lP~~~R~~---~~alyaf~re~d~i~d~~~--~~~~~~~rL~~w~~~l~~~~~--~~~~~~~~Pv~~aL~~~~~~ 109 (299)
+++.+.|.--.+. +.-+.+|--..||..|+.. ... ..+..+.+.+..... +......+|+..+|.+...+
T Consensus 93 l~a~~~P~a~~e~L~l~a~~~~wlF~~DD~~D~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~pl~~al~dl~~r 169 (382)
T 3kb9_A 93 LMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRA---GAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRR 169 (382)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7847189999999999999999999997426687777768---9999999999856226665765334999999999999
Q ss_pred CC--CCHHHHH-------HHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCC------CHHHHHHH
Q ss_conf 18--9989999-------99999985305---88889989999986443379999999840--343------03455766
Q gi|254780161|r 110 YD--LPNQYFL-------DMIEAHFFDSY---NDSIFDCKQFEHYAFRISSRLIHLATMIL--DSE------RYSASLRV 169 (299)
Q Consensus 110 ~~--l~~~~l~-------~lid~~~~Dl~---~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~--~~~------~~~~~~~~ 169 (299)
.. .+..+.. .++.+..+... ....++++|....-..+.|....+.+--+ |.. ........
T Consensus 170 l~~~~~~~~~~rf~~~~~~~~~a~~~Ea~~r~~g~vPsl~eYl~~R~~t~g~~~~~~l~e~~~g~~lp~~~~~~~~~~~l 249 (382)
T 3kb9_A 170 LYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRA 249 (382)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHH
T ss_conf 98224999999999999999999999999987699999999999988865578999999998489889998818317899
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCC-CCCHHHHHHCCCCHHH
Q ss_conf 88999999899887224787634887-3467899963999778
Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHYHRGQL-YFPLDILGAVGLDRES 211 (299)
Q Consensus 170 a~~lG~A~ql~niLRdi~~d~~~gr~-yLP~~~l~~~gv~~e~ 211 (299)
....+....++|=+-....+.+.|.. -+-.-++..+|++.++
T Consensus 250 ~~~~~~~~~l~NDi~S~~KE~~~g~~~NlV~vl~~~~g~s~ee 292 (382)
T 3kb9_A 250 ALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEE 292 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHH
T ss_conf 9999999999999889887640577564999999717989999
No 20
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae}
Probab=88.67 E-value=1.1 Score=22.30 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHC---CCC-C---HHHHHHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCHHHHH
Q ss_conf 889989999986443379999999840---343-0---345576688999999899887224787634-88734678999
Q gi|254780161|r 132 SIFDCKQFEHYAFRISSRLIHLATMIL---DSE-R---YSASLRVIKYAGIAQFIGQLICQLPIHYHR-GQLYFPLDILG 203 (299)
Q Consensus 132 ~~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~~-~---~~~~~~~a~~lG~A~ql~niLRdi~~d~~~-gr~yLP~~~l~ 203 (299)
...+.+++..-+....+++..+++.+. ... + .+.......++|.|+|+.+=+.|+-.|... |+-
T Consensus 173 ~~~s~~~y~~~~~~KT~~l~~~~~~~~~~l~~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~g~~~~~GK~-------- 244 (302)
T 3p8r_A 173 RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKP-------- 244 (302)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC--------
T ss_conf 789999999999999989999999988875057756789999998899886788975876602886774997--------
Q ss_pred HCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 6399977852468998799999999999999999999644528999
Q gi|254780161|r 204 AVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299)
Q Consensus 204 ~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299)
.-+|+..|..|=-+--.++.--..++.++.++...+..+|..
T Consensus 245 ----~g~Dl~~gK~Tlp~i~a~e~a~~~~~~~l~~a~~~l~~~~~~ 286 (302)
T 3p8r_A 245 ----QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ----HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----303877598529999999976999999999999988758965
No 21
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=88.64 E-value=1.1 Score=22.29 Aligned_cols=172 Identities=10% Similarity=-0.003 Sum_probs=94.5
Q ss_pred HHHHHHCCHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-
Q ss_conf 799885998880---6899999999999776036788258999999999999977401789868989999999998618-
Q gi|254780161|r 36 YLACLLSPPLYR---ISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYD- 111 (299)
Q Consensus 36 y~a~~~lP~~~R---~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~- 111 (299)
.+++++.|.-.. .-+.-+.++.-..||..|+.+... ..+.....++.........+..|+..+|.+..++..
T Consensus 48 ~~~a~~~P~a~~e~l~l~a~~~~~~f~~DD~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 123 (300)
T 1di1_A 48 EVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMSFAD----GEAYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRA 123 (300)
T ss_dssp HHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSCHHH----HHHHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH----HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999997789999999999999999998614404688155----9999999998640688987667899999999999998
Q ss_pred CCHHHHHHHHHHHH---HHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCCH----HHHHHHHHHHHHHHHH
Q ss_conf 99899999999998---530---58888998999998644337999999984--034303----4557668899999989
Q gi|254780161|r 112 LPNQYFLDMIEAHF---FDS---YNDSIFDCKQFEHYAFRISSRLIHLATMI--LDSERY----SASLRVIKYAGIAQFI 179 (299)
Q Consensus 112 l~~~~l~~lid~~~---~Dl---~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i--~~~~~~----~~~~~~a~~lG~A~ql 179 (299)
.....+..+++... ... ....++++++...+-..+.|.-..+.+-- .+..-+ .......+..+....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~eYl~~R~~~~g~~~~~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~i~l 203 (300)
T 1di1_A 124 HDAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSV 203 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999999984058999999999998851409899999999848999888987799999999999998
Q ss_pred HHHHHCCHHHHHCCC---------CCCCHHHHHHCCCCHHH
Q ss_conf 988722478763488---------73467899963999778
Q gi|254780161|r 180 GQLICQLPIHYHRGQ---------LYFPLDILGAVGLDRES 211 (299)
Q Consensus 180 ~niLRdi~~d~~~gr---------~yLP~~~l~~~gv~~e~ 211 (299)
+|=+=....+.+.|. .-+-.-.+..+|++.++
T Consensus 204 ~NDl~S~~KE~~~g~~~~~~~~~~~N~V~vl~~~~~~s~~e 244 (300)
T 1di1_A 204 VNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPA 244 (300)
T ss_dssp HHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCHHH
T ss_conf 73897899999747544555665655799999825999999
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=88.57 E-value=1.1 Score=22.26 Aligned_cols=107 Identities=11% Similarity=-0.005 Sum_probs=61.8
Q ss_pred HHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC---HHHHHHHHHHHHHHHHHHHHHHCCH-----
Q ss_conf 9999985305888-8998999998644337999999984---03430---3455766889999998998872247-----
Q gi|254780161|r 120 MIEAHFFDSYNDS-IFDCKQFEHYAFRISSRLIHLATMI---LDSER---YSASLRVIKYAGIAQFIGQLICQLP----- 187 (299)
Q Consensus 120 lid~~~~Dl~~~~-~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~---~~~~~~~a~~lG~A~ql~niLRdi~----- 187 (299)
++.|...|+.... ..+++++..-+....|.+..+++.+ ++..+ .........++|.|+|+.+=+-|+-
T Consensus 150 ~~~GQ~lDl~~~~~~~~~~~y~~i~~~KT~~l~~~~~~~ga~l~~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~gd~~~ 229 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAK 229 (301)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHH
T ss_conf 98769999982489999999999999999999999999999871573777999999998722101223088773488888
Q ss_pred ------HHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf ------8763488734678999639997785246899879999999999999999999964452899
Q gi|254780161|r 188 ------IHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP 248 (299)
Q Consensus 188 ------~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~ 248 (299)
.|...|+.-+|.-. .++.--++++.+..++.+.+..++.
T Consensus 230 ~GK~~g~Dl~egK~Tl~~i~----------------------a~~~a~~~~~~~~~~a~~~l~~~~~ 274 (301)
T 1rtr_A 230 LGKKVGSDLENNKSTYVSLL----------------------GKDGAEDKLTYHRDAAVDELTQIDE 274 (301)
T ss_dssp -------------CCHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HCCCHHHHHHCCCCCHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 59984238775986299999----------------------9999999999999999999986757
No 23
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=87.60 E-value=1.2 Score=21.86 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCH---HHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 9999998530588-889989999986443379999999840----34303---45576688999999899887224----
Q gi|254780161|r 119 DMIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMIL----DSERY---SASLRVIKYAGIAQFIGQLICQL---- 186 (299)
Q Consensus 119 ~lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i~----~~~~~---~~~~~~a~~lG~A~ql~niLRdi---- 186 (299)
.++.|...|+... ...+++++......-.|++..+++.+. +.... ........++|.|+|+.+=+.|+
T Consensus 153 ~l~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~~a~~~~~~~~~~~~~~~~~g~~lG~afQi~DD~lD~~~~~ 232 (299)
T 1rqj_A 153 GMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDT 232 (299)
T ss_dssp THHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCH
T ss_conf 99999999998117899999999999999999999999988998454056899999998899999998510877622888
Q ss_pred -------HHHHHCCCCCCCH
Q ss_conf -------7876348873467
Q gi|254780161|r 187 -------PIHYHRGQLYFPL 199 (299)
Q Consensus 187 -------~~d~~~gr~yLP~ 199 (299)
+.|...|+.-+|.
T Consensus 233 ~~~GK~~g~Dl~egk~Tlp~ 252 (299)
T 1rqj_A 233 ATLGKRQGADQQLGKSTYPA 252 (299)
T ss_dssp HHHSSCTTHHHHHTCCCHHH
T ss_pred HHHCCCHHHHHHCCCCCHHH
T ss_conf 66099651487759853999
No 24
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=85.22 E-value=1.6 Score=21.05 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=45.0
Q ss_pred HHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999853058-888998999998644337999999984---0343---03455766889999998998872247
Q gi|254780161|r 120 MIEAHFFDSYN-DSIFDCKQFEHYAFRISSRLIHLATMI---LDSE---RYSASLRVIKYAGIAQFIGQLICQLP 187 (299)
Q Consensus 120 lid~~~~Dl~~-~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~---~~~~~~~~a~~lG~A~ql~niLRdi~ 187 (299)
++.|...|+.. ....|++++..-+..-.|++..+++.+ ++.. ..........++|.|+|+.+=+.|+-
T Consensus 158 ~~~Gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lGiafQi~DD~lD~~ 232 (302)
T 3p8l_A 158 MVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDAT 232 (302)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999989998700457989999999997799999999973130048857889999999999888864159878534
No 25
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* 3n1w_F* 3n3l_F* 2f94_F* ...
Probab=79.83 E-value=2.6 Score=19.70 Aligned_cols=90 Identities=9% Similarity=-0.057 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHH-HHHHHHH---HHHHHCCCCCH----HHHHHHHHHHHHHHHHH
Q ss_conf 999999999853058888-------998999998644-3379999---99984034303----45576688999999899
Q gi|254780161|r 116 YFLDMIEAHFFDSYNDSI-------FDCKQFEHYAFR-ISSRLIH---LATMILDSERY----SASLRVIKYAGIAQFIG 180 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~~~-------~t~~~L~~Y~~~-~ag~vg~---l~~~i~~~~~~----~~~~~~a~~lG~A~ql~ 180 (299)
....+..|...|+...+- .|+++...-+.. ||.-.+. .++.++++... ........++|.|+|+.
T Consensus 184 ~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~Y~~ii~~KTa~l~~~~~~~~~~~~ag~~~~~~~~~l~~~g~~lG~aFQI~ 263 (374)
T 2qis_A 184 SSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQ 263 (374)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999875999988312566664316799999999998668899999998864011018889988878999999989512
Q ss_pred HHHHCC----------HHHHHCCCCCCCHHHHHHC
Q ss_conf 887224----------7876348873467899963
Q gi|254780161|r 181 QLICQL----------PIHYHRGQLYFPLDILGAV 205 (299)
Q Consensus 181 niLRdi----------~~d~~~gr~yLP~~~l~~~ 205 (299)
+=+-|+ +.|+..|++-+|.-..-+.
T Consensus 264 DD~LD~~gd~~~~GK~g~Di~egK~Tlpvi~ale~ 298 (374)
T 2qis_A 264 DDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHCCCCCHHHCCCCHHHHHHHHHH
T ss_conf 35554018956648866577669411999999982
No 26
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=78.99 E-value=2.8 Score=19.53 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCC--CHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999985305888899899999864433799999998---40343--0345576688999999899887224
Q gi|254780161|r 117 FLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATM---ILDSE--RYSASLRVIKYAGIAQFIGQLICQL 186 (299)
Q Consensus 117 l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~--~~~~~~~~a~~lG~A~ql~niLRdi 186 (299)
+..+..|...|+. +.++...-+..-.|++..+++. +.+.. ..........++|.|+|+.|=+-|+
T Consensus 144 ~~~~~~Gq~~d~~-----~~~~y~~~i~~KTg~Lf~~~~~~ga~~~~~~~~~~~l~~~g~~lG~afQi~DD~lD~ 213 (289)
T 2azj_A 144 WKDTSVGALRDMY-----DNSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDY 213 (289)
T ss_dssp HHHHHHHHHHTTT-----TTSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7777641455216-----688999999999889999998768986388102268999987767899999998873
No 27
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=78.15 E-value=2.9 Score=19.36 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=73.4
Q ss_pred HHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCC---CHHHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 999999853058--888998999998644337999999984---0343---0345576688999999899887224----
Q gi|254780161|r 119 DMIEAHFFDSYN--DSIFDCKQFEHYAFRISSRLIHLATMI---LDSE---RYSASLRVIKYAGIAQFIGQLICQL---- 186 (299)
Q Consensus 119 ~lid~~~~Dl~~--~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~---~~~~~~~~a~~lG~A~ql~niLRdi---- 186 (299)
.+..|...+... ....+.+++..-+..-.|++..+++.+ ++.. ..........++|.|+|+.+=+.|+
T Consensus 141 ~~~~g~~~~~~~~~~~~~~~~~y~~ii~~KT~~l~~~~~~~~ail~~~~~~~~~~l~~~g~~lGiafQi~DD~ld~~~~~ 220 (325)
T 3aqb_B 141 EVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDE 220 (325)
T ss_dssp HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCH
T ss_conf 54114189988860788899999999999999999999999999769975656359999999999998344132035886
Q ss_pred -------HHHHHCCCCCCCHHHHHHC----CCC-HHHHHCC---CCCHH-HHHH--------HHHHHHHHHHHHHHHHHH
Q ss_conf -------7876348873467899963----999-7785246---89987-9999--------999999999999999964
Q gi|254780161|r 187 -------PIHYHRGQLYFPLDILGAV----GLD-RESFLSG---QNSDR-ISLA--------IKIFAELGLKYLFKAREE 242 (299)
Q Consensus 187 -------~~d~~~gr~yLP~~~l~~~----gv~-~e~l~~~---~~~~~-~~~~--------~~~~~~~A~~~l~~a~~~ 242 (299)
+.|+..|+.-+|.-..-+. .-. .+++... ..++. ++.+ +..-...++.+.++|...
T Consensus 221 ~~~GK~~g~Di~egK~T~p~i~al~~~~~~~~~~l~~il~~~~~~~~~e~~~~~~~~~~~~~i~~a~~~~~~~~~~A~~~ 300 (325)
T 3aqb_B 221 ATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYH 300 (325)
T ss_dssp HHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 55198702087769966899999996889779999999850546995999999999997080999999999999999999
Q ss_pred HHHCCHH
Q ss_conf 4528999
Q gi|254780161|r 243 MRYILPD 249 (299)
Q Consensus 243 ~~~lp~~ 249 (299)
+..+|..
T Consensus 301 l~~lp~~ 307 (325)
T 3aqb_B 301 LSQLQDS 307 (325)
T ss_dssp HHTSCCC
T ss_pred HHCCCCC
T ss_conf 8669997
No 28
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=76.99 E-value=3.1 Score=19.15 Aligned_cols=171 Identities=7% Similarity=-0.015 Sum_probs=89.7
Q ss_pred HHHHHCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC-
Q ss_conf 9988599888068---999999999997760367882589999999999999774017898689899999999986189-
Q gi|254780161|r 37 LACLLSPPLYRIS---LSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDL- 112 (299)
Q Consensus 37 ~a~~~lP~~~R~~---~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~~~~~~Pv~~aL~~~~~~~~l- 112 (299)
+++++.|.-..+. +.-+..+.-..||+.|+........ .....+.....+....+..|+..++.+..++..-
T Consensus 63 ~aa~~~P~a~~e~L~l~~~~~~w~f~~DD~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 138 (320)
T 3bny_A 63 VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSFEEGSA----YNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAH 138 (320)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88884899999999999999999999734343167566899----99999987507889997777999999999999997
Q ss_pred CHHHHHHHHHHH---HHHC---CCCCCCCHHHHHHHHHHHHHHHHHHH-HH-HCCCCCH----HHHHHHHHHHHHHHHHH
Q ss_conf 989999999999---8530---58888998999998644337999999-98-4034303----45576688999999899
Q gi|254780161|r 113 PNQYFLDMIEAH---FFDS---YNDSIFDCKQFEHYAFRISSRLIHLA-TM-ILDSERY----SASLRVIKYAGIAQFIG 180 (299)
Q Consensus 113 ~~~~l~~lid~~---~~Dl---~~~~~~t~~~L~~Y~~~~ag~vg~l~-~~-i~~~~~~----~~~~~~a~~lG~A~ql~ 180 (299)
.+.....+++.. .... ....++++++...+=..+.|.-..+. .+ ..+...+ +.........+....++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~psl~eY~~~R~~~~g~~~~~~l~e~~~~~~l~~~~~~~~~~l~~~~~~~~~l~ 218 (320)
T 3bny_A 139 DREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVV 218 (320)
T ss_dssp HHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999999876278989999999998725588999999997579998899999999999999999998
Q ss_pred HHHHCCHHHHHCCC---------CCCCHHHHHHCCCCHHH
Q ss_conf 88722478763488---------73467899963999778
Q gi|254780161|r 181 QLICQLPIHYHRGQ---------LYFPLDILGAVGLDRES 211 (299)
Q Consensus 181 niLRdi~~d~~~gr---------~yLP~~~l~~~gv~~e~ 211 (299)
|=+-..+...+.|. .-+..-++..+|++.++
T Consensus 219 NDl~S~~KE~~~g~~~~~~~~~~~N~v~vl~~~~~~s~~~ 258 (320)
T 3bny_A 219 NDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEA 258 (320)
T ss_dssp HHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
T ss_conf 4898999998603433445542102123346506989999
No 29
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=73.84 E-value=3.8 Score=18.61 Aligned_cols=88 Identities=7% Similarity=0.029 Sum_probs=53.1
Q ss_pred HHHHHHHHHHCCCC------------------CCCCHHHHHHHHH-HHHHHHHHH---HHHHCCCC----CHHHHHHHHH
Q ss_conf 99999998530588------------------8899899999864-433799999---99840343----0345576688
Q gi|254780161|r 118 LDMIEAHFFDSYND------------------SIFDCKQFEHYAF-RISSRLIHL---ATMILDSE----RYSASLRVIK 171 (299)
Q Consensus 118 ~~lid~~~~Dl~~~------------------~~~t~~~L~~Y~~-~~ag~vg~l---~~~i~~~~----~~~~~~~~a~ 171 (299)
.....|+..|+... .-.|++++..-+. .|+.-.+.+ +..++++. ........+.
T Consensus 189 ~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~~~~l~~~g~ 268 (390)
T 3dyh_A 189 YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAM 268 (390)
T ss_dssp HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99988888644301024123477763022343217999999999977669999999999897705117889988988899
Q ss_pred HHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHHC
Q ss_conf 999999899887224----------7876348873467899963
Q gi|254780161|r 172 YAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGAV 205 (299)
Q Consensus 172 ~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~~ 205 (299)
++|.|+|+.+=+.|+ +.|+..|++-+|.-..-+.
T Consensus 269 ~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~Tlp~i~al~~ 312 (390)
T 3dyh_A 269 LMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAK 312 (390)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999887008967869745678769833999999985
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A*
Probab=69.67 E-value=4.6 Score=17.99 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=58.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCC-CCH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCHHH
Q ss_conf 8888998999998644337999999984---034-303---45576688999999899887224787634-887346789
Q gi|254780161|r 130 NDSIFDCKQFEHYAFRISSRLIHLATMI---LDS-ERY---SASLRVIKYAGIAQFIGQLICQLPIHYHR-GQLYFPLDI 201 (299)
Q Consensus 130 ~~~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~-~~~---~~~~~~a~~lG~A~ql~niLRdi~~d~~~-gr~yLP~~~ 201 (299)
.....+.+++...+....+++..+++.+ ++. ... +.......++|.|+|+.+=+.|+-.+... |+-
T Consensus 165 ~~~~~~~~~~~~i~~~KT~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~g~~~~~GK~------ 238 (304)
T 3lsn_A 165 VGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKR------ 238 (304)
T ss_dssp TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC------
T ss_conf 10245569999999999899999999999998565406799999999999999999999987622896551986------
Q ss_pred HHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9963999778524689987999999999999999999996445289999
Q gi|254780161|r 202 LGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDV 250 (299)
Q Consensus 202 l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~ 250 (299)
.-.|+..|..|=-+--.++.--..++.+..++...+...+...
T Consensus 239 ------~g~Dl~~gK~Tlp~i~al~~a~~~~~~~~~~a~~~l~~~~~~~ 281 (304)
T 3lsn_A 239 ------QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAA 281 (304)
T ss_dssp ---------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGG
T ss_pred ------HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf ------7679776976799999999889999999999998746478017
No 31
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=64.98 E-value=5.7 Score=17.38 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHCCCCC----CCCHHHHHHH-HHHHHHHHHHHH---HHHCCC-----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985305888----8998999998-644337999999---984034-----3034557668899999989988
Q gi|254780161|r 116 YFLDMIEAHFFDSYNDS----IFDCKQFEHY-AFRISSRLIHLA---TMILDS-----ERYSASLRVIKYAGIAQFIGQL 182 (299)
Q Consensus 116 ~l~~lid~~~~Dl~~~~----~~t~~~L~~Y-~~~~ag~vg~l~---~~i~~~-----~~~~~~~~~a~~lG~A~ql~ni 182 (299)
....+..|...|+.... ..+.++...- -+.|++..+.++ ..++++ ...........++|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~t~e~Yl~ii~~KTa~l~f~~~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DD 255 (368)
T 2her_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87787630899887451156885699999999998641688899999999715420237899999999999999991798
Q ss_pred HHC------CHHHHHCCCCCCCHHHHHHCCCCHHH---HHC--CCCCHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q ss_conf 722------47876348873467899963999778---524--6899879999999------999999999999964452
Q gi|254780161|r 183 ICQ------LPIHYHRGQLYFPLDILGAVGLDRES---FLS--GQNSDRISLAIKI------FAELGLKYLFKAREEMRY 245 (299)
Q Consensus 183 LRd------i~~d~~~gr~yLP~~~l~~~gv~~e~---l~~--~~~~~~~~~~~~~------~~~~A~~~l~~a~~~~~~ 245 (299)
+-| ++.|+..|++-+|.-..-+. .++++ +.. +...+.++++... ..+.++..++.+...+..
T Consensus 256 ~lD~~~gk~~g~Di~egK~Tlpvi~ale~-~~~~~k~~l~~~~~k~~~~vk~i~~~l~~~~~~~~~~~~~~~~l~~~i~~ 334 (368)
T 2her_A 256 VSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKD 334 (368)
T ss_dssp HHHHHSCCSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCCCCCCHHHCCCCHHHHHHHHHH-CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75240699868377569708999999996-99999999999867877899999999807899999999999999999986
Q ss_pred CCHHH
Q ss_conf 89999
Q gi|254780161|r 246 ILPDV 250 (299)
Q Consensus 246 lp~~~ 250 (299)
+|...
T Consensus 335 l~~~~ 339 (368)
T 2her_A 335 ITDDS 339 (368)
T ss_dssp CSCHH
T ss_pred CCCHH
T ss_conf 64300
No 32
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3mys_A*
Probab=63.74 E-value=6 Score=17.23 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCCC--------------------------CCCHHHHHHHHHHHHHHH-HH---HHHHHCCC-CC---
Q ss_conf 9999999985305888--------------------------899899999864433799-99---99984034-30---
Q gi|254780161|r 117 FLDMIEAHFFDSYNDS--------------------------IFDCKQFEHYAFRISSRL-IH---LATMILDS-ER--- 162 (299)
Q Consensus 117 l~~lid~~~~Dl~~~~--------------------------~~t~~~L~~Y~~~~ag~v-g~---l~~~i~~~-~~--- 162 (299)
...++.|...|+.... -.|+++...-+..-.|.+ .. .+..++++ ..
T Consensus 187 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~ag~~~d~~ 266 (395)
T 2ihi_A 187 TLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp HHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999999998860120466665200112100001222438999999999975489999999999998604630089
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCCCCHHHHHHCCCCHHH---HHC--CCCCHHHHHHH-
Q ss_conf -345576688999999899887224----------7876348873467899963999778---524--68998799999-
Q gi|254780161|r 163 -YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLYFPLDILGAVGLDRES---FLS--GQNSDRISLAI- 225 (299)
Q Consensus 163 -~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~yLP~~~l~~~gv~~e~---l~~--~~~~~~~~~~~- 225 (299)
.........++|.|+|+.+=+.|+ +.|+..|++-+|.-..-+.. ++++ +.. +..++.-.+.+
T Consensus 267 ~~~~l~~~g~~lGiaFQI~DD~lD~~gd~~~~GK~g~Di~egK~Tlp~i~al~~~-~~~~r~~L~~~~~~~d~~~~~~i~ 345 (395)
T 2ihi_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC-SEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHC-CHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHC-CHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999999999986687761089533597115776796169999999969-999999999986799979999999
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf ---------9999999999999996445289999
Q gi|254780161|r 226 ---------KIFAELGLKYLFKAREEMRYILPDV 250 (299)
Q Consensus 226 ---------~~~~~~A~~~l~~a~~~~~~lp~~~ 250 (299)
......++.+...+...+..+|...
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~ 379 (395)
T 2ihi_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHHEG 379 (395)
T ss_dssp HC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999769299999999999999999787368389
No 33
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=59.24 E-value=7.2 Score=16.70 Aligned_cols=205 Identities=11% Similarity=0.054 Sum_probs=99.7
Q ss_pred HHHHHCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99885998---880689999999999977603678825899999999999997740---178986898999999999861
Q gi|254780161|r 37 LACLLSPP---LYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTK---GLIAESISPFSVELLSIVRQY 110 (299)
Q Consensus 37 ~a~~~lP~---~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~---~~~~~~~~Pv~~aL~~~~~~~ 110 (299)
.+..+.|| ..|..+.-+.++.-.+||+-|....... |+-.-++++.=.. +.-..--..+..+|-.++...
T Consensus 275 a~~~~~eP~~s~aR~~~tK~~~l~tviDD~yD~ygt~eE----l~~ft~aieRWD~~~~~~lpeymk~~f~~l~~~~~e~ 350 (549)
T 1n1b_A 275 AVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDE----LELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDA 350 (549)
T ss_dssp HHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHH----HHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999626885589999999999999999987305798999----9999999981585031113078999999999999999
Q ss_pred --------C-CC----HHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHH---
Q ss_conf --------8-99----899999999998530---5888899899999864433799999998403430---345576---
Q gi|254780161|r 111 --------D-LP----NQYFLDMIEAHFFDS---YNDSIFDCKQFEHYAFRISSRLIHLATMILDSER---YSASLR--- 168 (299)
Q Consensus 111 --------~-l~----~~~l~~lid~~~~Dl---~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~---~~~~~~--- 168 (299)
+ -. ++.+..++.+..... .....+|++|...-..-+.|....++...++..+ ......
T Consensus 351 ~~~~~~~~~~~~~~~lk~~w~~l~~a~l~EAkW~~~g~vPt~eEYm~~~~iS~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 430 (549)
T 1n1b_A 351 AYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLY 430 (549)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEECHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 99998806722899999999999999999999996596888999976141136589999999995677653399997540
Q ss_pred ----HHHHHHHHHHHHHHHHCCHHHHHCCCCC-CCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----6889999998998872247876348873-46789996399977852468998799999999999999999999644
Q gi|254780161|r 169 ----VIKYAGIAQFIGQLICQLPIHYHRGQLY-FPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEM 243 (299)
Q Consensus 169 ----~a~~lG~A~ql~niLRdi~~d~~~gr~y-LP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 243 (299)
..+..|.-.-|.|=+..-.....+|.+- -=.--|.++|+++|+ ...-+..+++.+...+.+..-..
T Consensus 431 ~~p~i~~~~~~i~RL~nDi~s~~~E~~rG~vas~V~cYMke~g~seEe---------A~~~i~~~ie~~wk~ln~e~l~~ 501 (549)
T 1n1b_A 431 QYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEE---------AVEHVKFLIREAWKDMNTAIAAG 501 (549)
T ss_dssp TTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 247999999999998675426687870687401799970479999999---------99999999999999999998189
Q ss_pred HHCCHHHHHHH
Q ss_conf 52899999999
Q gi|254780161|r 244 RYILPDVFPAF 254 (299)
Q Consensus 244 ~~lp~~~r~~~ 254 (299)
..+|+.+...+
T Consensus 502 ~~~p~~~~~~~ 512 (549)
T 1n1b_A 502 YPFPDGMVAGA 512 (549)
T ss_dssp CSSCHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 99999999999
No 34
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=54.39 E-value=8.6 Score=16.18 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCH-----------HHHHCCCCCC
Q ss_conf 88998999998644337999999984---034303455766889999998998872247-----------8763488734
Q gi|254780161|r 132 SIFDCKQFEHYAFRISSRLIHLATMI---LDSERYSASLRVIKYAGIAQFIGQLICQLP-----------IHYHRGQLYF 197 (299)
Q Consensus 132 ~~~t~~~L~~Y~~~~ag~vg~l~~~i---~~~~~~~~~~~~a~~lG~A~ql~niLRdi~-----------~d~~~gr~yL 197 (299)
...+.++.........+++...++.+ ++............++|.|+|+.+=+.|+- .|+..|+.-+
T Consensus 164 ~~~~~~~~~~~~~~KTa~l~~~~~~~~~~~~~~~~~~~~~~g~~lG~aFQi~DDlld~~gd~~~~GK~~g~Dl~egK~T~ 243 (297)
T 3m0g_A 164 VPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATF 243 (297)
T ss_dssp SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC---------------------CCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHCCCCCH
T ss_conf 30789999998799999999999998998749978999987788888999888988731787640996655987599769
Q ss_pred CH
Q ss_conf 67
Q gi|254780161|r 198 PL 199 (299)
Q Consensus 198 P~ 199 (299)
|.
T Consensus 244 ~~ 245 (297)
T 3m0g_A 244 VS 245 (297)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 35
>2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8}
Probab=53.55 E-value=8.8 Score=16.09 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 88899899999864433799999998---40343034557668899999989988722478763
Q gi|254780161|r 131 DSIFDCKQFEHYAFRISSRLIHLATM---ILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYH 191 (299)
Q Consensus 131 ~~~~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~~~~~~~~a~~lG~A~ql~niLRdi~~d~~ 191 (299)
....+.+++..-.....|+++.+++. ++++.+..........+|.|+|+.+=+.|+--|.+
T Consensus 160 ~~~~~~~~~~~~~~~KT~~lf~~~~~~gail~g~~~~~l~~~g~~lG~aFQI~DDilD~~gd~~ 223 (284)
T 2ftz_A 160 XMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLXDILGSFE 223 (284)
T ss_dssp CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCHH
T ss_conf 0201189999999988999998899999998089787999875066887521063310258989
No 36
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=43.37 E-value=13 Score=15.05 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC---CCC---CHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 999998530588-889989999986443379999999840---343---03455766889999998998872247876
Q gi|254780161|r 120 MIEAHFFDSYND-SIFDCKQFEHYAFRISSRLIHLATMIL---DSE---RYSASLRVIKYAGIAQFIGQLICQLPIHY 190 (299)
Q Consensus 120 lid~~~~Dl~~~-~~~t~~~L~~Y~~~~ag~vg~l~~~i~---~~~---~~~~~~~~a~~lG~A~ql~niLRdi~~d~ 190 (299)
++.+...|+... .-.+++++..-+....+++..+++.+. +.. ..........++|.|+|+.+=+-|+--|.
T Consensus 147 ~~~gq~~d~~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DDilD~~gd~ 224 (291)
T 3npk_A 147 MVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQ 224 (291)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 998889999875057879999999999888589899999999847999999999989998888877379988633888
No 37
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B*
Probab=35.62 E-value=16 Score=14.25 Aligned_cols=66 Identities=11% Similarity=-0.045 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH---HCCCCC---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999853058888-99899999864433799999998---403430---3455766889999998998872
Q gi|254780161|r 119 DMIEAHFFDSYNDSI-FDCKQFEHYAFRISSRLIHLATM---ILDSER---YSASLRVIKYAGIAQFIGQLIC 184 (299)
Q Consensus 119 ~lid~~~~Dl~~~~~-~t~~~L~~Y~~~~ag~vg~l~~~---i~~~~~---~~~~~~~a~~lG~A~ql~niLR 184 (299)
.++.|...|+..... .+.+++..-+....|+++..++. ++++.+ .+.......++|+++|+.+...
T Consensus 150 g~~~Gq~~d~~~~~~~~~~~~~~~i~~~KTa~Lf~~~~~~gailag~~~~~~~~l~~~G~~lGi~~qi~dd~~ 222 (274)
T 3kra_B 150 GMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKN 222 (274)
T ss_dssp THHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8871258998840677778999999986453999999999999819399999999999999588732246653
No 38
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=34.54 E-value=17 Score=14.14 Aligned_cols=204 Identities=13% Similarity=0.106 Sum_probs=98.6
Q ss_pred HHHHCC--HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHC--
Q ss_conf 988599--8880689999999999977603678825899999999999997740---178986898999999999861--
Q gi|254780161|r 38 ACLLSP--PLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTK---GLIAESISPFSVELLSIVRQY-- 110 (299)
Q Consensus 38 a~~~lP--~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~---~~~~~~~~Pv~~aL~~~~~~~-- 110 (299)
++.|-| ...|..+.-+.++...+||+-|...... + |+-.-++++.=.. +.-.+-...+..+|..++.+.
T Consensus 280 ~~~fEPq~s~~Ri~~aK~~~l~tiiDD~yD~ygt~e--E--l~~ft~ai~RWD~~~~~~lpeymk~~f~al~~t~~e~~~ 355 (555)
T 3n0f_A 280 GVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLD--E--LELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAY 355 (555)
T ss_dssp HHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHH--H--HHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--H--HHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 961580158999999999999998888753469999--9--999999997478422210778899999999999999999
Q ss_pred ------CC-C----HHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHH------
Q ss_conf ------89-9----89999999999853---0588889989999986443379999999840--3430345576------
Q gi|254780161|r 111 ------DL-P----NQYFLDMIEAHFFD---SYNDSIFDCKQFEHYAFRISSRLIHLATMIL--DSERYSASLR------ 168 (299)
Q Consensus 111 ------~l-~----~~~l~~lid~~~~D---l~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~--~~~~~~~~~~------ 168 (299)
+- . ++.+..++.+.... ......+|++|...-+..+.|....++...+ |.........
T Consensus 356 ~~~~~~~~~~~~~lk~~w~~l~~a~l~EAkW~~~gyvPt~eEYl~~~~vS~~~~~~~~~~~~~~g~~~~~e~~~~~~~~p 435 (555)
T 3n0f_A 356 DNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYH 435 (555)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTC
T ss_pred HHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99985694089999999999999999999999659999788874130134338999999999727887899997254436
Q ss_pred -HHHHHHHHHHHHHHHHCCHHHHHCCCCC-CCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -6889999998998872247876348873-46789996399977852468998799999999999999999999644528
Q gi|254780161|r 169 -VIKYAGIAQFIGQLICQLPIHYHRGQLY-FPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYI 246 (299)
Q Consensus 169 -~a~~lG~A~ql~niLRdi~~d~~~gr~y-LP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l 246 (299)
..+..+.-.-|.|=+..-.....+|.+. -=.--|.++|+++|+ ...-+..+++.+...+.+-.-....+
T Consensus 436 ~i~~~~~~I~RL~nDi~s~~~E~~rG~~~ssI~cYMke~g~teEe---------A~~~i~~~i~~~wK~ln~e~l~~~~v 506 (555)
T 3n0f_A 436 DIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNKEKLGGSLF 506 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999999887776687870687410688974489999999---------99999999999999999998379999
Q ss_pred CHHHHHHH
Q ss_conf 99999999
Q gi|254780161|r 247 LPDVFPAF 254 (299)
Q Consensus 247 p~~~r~~~ 254 (299)
|+.+.-.+
T Consensus 507 p~~~~~~~ 514 (555)
T 3n0f_A 507 AKPFVETA 514 (555)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
T ss_conf 99999999
No 39
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, protein structure initiative, PSI; 1.88A {Pyrococcus furiosus dsm 3638} SCOP: a.96.1.6
Probab=27.85 E-value=22 Score=13.40 Aligned_cols=193 Identities=12% Similarity=0.019 Sum_probs=103.9
Q ss_pred HHHHHH-HHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 689999-9999999998528138799885998880689999999999977603678825899999999999997740178
Q gi|254780161|r 14 EKIFSR-DSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRLQWWKDIFESSTKGLI 92 (299)
Q Consensus 14 ~~~~~~-d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~rL~~w~~~l~~~~~~~~ 92 (299)
..||.+ +.+....+..+.|+.|...+.+.+. .-...++.......+ -+.+-...|+ .||.+.-+. +.+.+
T Consensus 13 ~eil~~l~ie~~~~ieek~DpQy~av~~L~~~-~~~~~f~~Lvi~NaL----vSYQLsgkGE---e~W~eFs~y-fs~~~ 83 (250)
T 1xg7_A 13 VEIIKGIGIEGAKEVEEKVDRQFYALQYLFRH-QDPEMFIKLVIANSL----VSYQLTGRGE---DWWWEFARY-FSGRE 83 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTT-SCHHHHHHHHHHHHH----TCSSCSSCHH---HHHHHHHHH-HTTCC
T ss_pred HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH-CCCHHHHHHHHHHHH----HHHHCCCCHH---HHHHHHHHH-HHCCC
T ss_conf 99998669999999998017899999999986-692389999999999----9986377579---899999999-86089
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9868989999999998618998999999---9999853058888998999998644337999999984034303455766
Q gi|254780161|r 93 AESISPFSVELLSIVRQYDLPNQYFLDM---IEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRV 169 (299)
Q Consensus 93 ~~~~~Pv~~aL~~~~~~~~l~~~~l~~l---id~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~ 169 (299)
+ .-+..++...+...+-.+.....- |+-...-+.. .+.+++..||.+ -..+-..++.+++.+....+.-.
T Consensus 84 --~-~~~~~~~~~FL~~s~~nrr~~~~K~kRi~r~~~fl~~---l~~~~l~~yy~~-l~~l~~~Lak~l~~~~~~KTIVF 156 (250)
T 1xg7_A 84 --V-DSIWKAYGEFLPKSKNNRRLIEAKLNRIRKVEGFLST---LTLKDLEGYYKN-MKMLWKALIKIMGSREDSKTIVF 156 (250)
T ss_dssp --C-SCHHHHHHHHTTTCSSCCSSHHHHHHHHHHHHHHHHT---CCHHHHHHHHHT-HHHHHHHHHHHHTCCTTCHHHHH
T ss_pred --C-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCEEEE
T ss_conf --7-4399999999753843188899899999999989888---887689999853-99999999998589987553432
Q ss_pred HH-HHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 88-9999998998872247876348873467899963999778524689987999999999999
Q gi|254780161|r 170 IK-YAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELG 232 (299)
Q Consensus 170 a~-~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A 232 (299)
|. -+|-|+-++. -+++|. -+++.+|.|.= .+.+.++-.++....++..++..+
T Consensus 157 AvKM~gYa~r~~~-~~~~p~---p~~IPIPvD~R------I~~~T~~~~~e~~~~~W~~Va~~~ 210 (250)
T 1xg7_A 157 TVKMFGYASRIAF-SRFIPY---PMEIPIPEDLR------IKSVTSKLTQEKPTKFWMKIGQES 210 (250)
T ss_dssp HHHHHHHHHHHHT-TSCCCC---CTTSCCCCCHH------HHHHHHTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCCC---CCCCCCCCHHH------HHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 7998999999963-677778---87899961289------999985413026999999999963
No 40
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=26.98 E-value=23 Score=13.30 Aligned_cols=70 Identities=6% Similarity=-0.060 Sum_probs=43.2
Q ss_pred CHHHHHHHHHH-HHHHHHHH---HHHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHCCCCC
Q ss_conf 98999998644-33799999---998403430----345576688999999899887224----------7876348873
Q gi|254780161|r 135 DCKQFEHYAFR-ISSRLIHL---ATMILDSER----YSASLRVIKYAGIAQFIGQLICQL----------PIHYHRGQLY 196 (299)
Q Consensus 135 t~~~L~~Y~~~-~ag~vg~l---~~~i~~~~~----~~~~~~~a~~lG~A~ql~niLRdi----------~~d~~~gr~y 196 (299)
|++++..-+.. |+.-.... +..++++.. .......+.++|.|+|+.+=+.|+ +.|+..|++-
T Consensus 196 t~~~Y~~~i~~KTa~L~~~~~~~~g~~~~g~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~~d~~~~GK~g~Dl~egK~T 275 (362)
T 1yhl_A 196 TPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCS 275 (362)
T ss_dssp SHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCCCCH
T ss_conf 89999999999874678999998778771363188998887678799999999999887007978868744678769735
Q ss_pred CCHHHHHH
Q ss_conf 46789996
Q gi|254780161|r 197 FPLDILGA 204 (299)
Q Consensus 197 LP~~~l~~ 204 (299)
+|.-..-+
T Consensus 276 lp~i~al~ 283 (362)
T 1yhl_A 276 WLAVTFLG 283 (362)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 99999998
No 41
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8}
Probab=24.01 E-value=26 Score=12.94 Aligned_cols=130 Identities=9% Similarity=-0.064 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHCC----CCCCCCHHHHHH-HHHHHHHHHHHHHH---HHC-CCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999985305----888899899999-86443379999999---840-3430345576688999999899887224
Q gi|254780161|r 116 YFLDMIEAHFFDSY----NDSIFDCKQFEH-YAFRISSRLIHLAT---MIL-DSERYSASLRVIKYAGIAQFIGQLICQL 186 (299)
Q Consensus 116 ~l~~lid~~~~Dl~----~~~~~t~~~L~~-Y~~~~ag~vg~l~~---~i~-~~~~~~~~~~~a~~lG~A~ql~niLRdi 186 (299)
....+..|...|+. .....+.+++.. ....+++..+.+++ .++ +............++|.|+|+.|=+.|+
T Consensus 138 ~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~Kta~l~~~~~~~~ga~~ag~~~~~~l~~~g~~lG~afQi~DDlld~ 217 (330)
T 1wmw_A 138 VVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIVDDVLNL 217 (330)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64223776342201012232232699999998872788899879998876601125789999999877899975787875
Q ss_pred H----------HHHHCCCCCCCHHHHHHCCCCHH-----HHHCCC---CC-HHHHHHHHH---------HHHHHHHHHHH
Q ss_conf 7----------87634887346789996399977-----852468---99-879999999---------99999999999
Q gi|254780161|r 187 P----------IHYHRGQLYFPLDILGAVGLDRE-----SFLSGQ---NS-DRISLAIKI---------FAELGLKYLFK 238 (299)
Q Consensus 187 ~----------~d~~~gr~yLP~~~l~~~gv~~e-----~l~~~~---~~-~~~~~~~~~---------~~~~A~~~l~~ 238 (299)
- .|+..|+..+|.=..-+.+-.++ .+.... .+ +.+..++.. ....+..|.++
T Consensus 218 ~~~~~~gK~~g~Dl~~gK~Tlpii~ale~~~~~~~~~l~~~~~~~~~~~~~~~i~~i~~~i~~~ga~~~~~~~~~~~~~~ 297 (330)
T 1wmw_A 218 EGGEAYGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAE 297 (330)
T ss_dssp SCSCCCSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 30064089855076669840999999997999999999999725566899999999999999879299999999999999
Q ss_pred HHHHHHH
Q ss_conf 9964452
Q gi|254780161|r 239 AREEMRY 245 (299)
Q Consensus 239 a~~~~~~ 245 (299)
|.+.++.
T Consensus 298 a~~~l~~ 304 (330)
T 1wmw_A 298 GLALLEA 304 (330)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999986
Done!