RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780161|ref|YP_003064574.1| phytoene synthase protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 333 Score = 79.0 bits (194), Expect = 4e-16 Identities = 21/246 (8%), Positives = 59/246 (23%), Gaps = 23/246 (9%) Query: 28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDT-----ARNPITRDMRLQWWKD 82 L R ++ Y +R DT + + L + Sbjct: 10 LNQTSRSFAAVIQALDGEMRNAVCIFYLV----LRALDTLEDDMTISVEKKVPLLHNFHS 65 Query: 83 IFESSTKGLIA---------ESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSI 133 + E S+E ++ +Y + + + + Sbjct: 66 FLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHV 125 Query: 134 FDCKQFEHYAFRISSRLIHLATMIL-----DSERYSASLRVIKYAGIAQFIGQLICQLPI 188 ++++ Y ++ + + + + G+ +I Sbjct: 126 TSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLE 185 Query: 189 HYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP 248 G+ ++P ++ F +N D + L ++ + + Sbjct: 186 DQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 245 Query: 249 DVFPAF 254 F Sbjct: 246 QSVFNF 251 >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 275 Score = 26.7 bits (58), Expect = 2.2 Identities = 24/190 (12%), Positives = 50/190 (26%), Gaps = 29/190 (15%) Query: 106 IVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSA 165 + D+P D + ++N++ ++ E L + Sbjct: 71 MSDASDVPILLDADTG----YGNFNNARRLVRKLE----DRGVAGACLEDKLFPKTNSLH 122 Query: 166 SLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAI 225 R A I +F ++ E+F++G D Sbjct: 123 DGRAQPLADIEEFALKIKACKDSQTDPDFCIV---------ARVEAFIAGWGLDEALKRA 173 Query: 226 KIFAELGLKYLF----KAREEMRYILPDVFPAFIPV-----SITESVLKHAQNHGFKIVS 276 + + G + KA + PV ++ H ++ G +V Sbjct: 174 EAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVI 233 Query: 277 HSHTPNQLVR 286 N +R Sbjct: 234 W---ANHNLR 240 >d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Length = 192 Score = 26.1 bits (57), Expect = 3.8 Identities = 13/48 (27%), Positives = 15/48 (31%) Query: 236 LFKAREEMRYILPDVFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQ 283 L LPD F P + +L F IVS P Q Sbjct: 32 LLARLVARDDWLPDAFAQPHPEYYQQMLLHCDSAERFSIVSFVWGPGQ 79 >d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]} Length = 254 Score = 25.5 bits (55), Expect = 6.6 Identities = 8/65 (12%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 224 AIKIFAELGLKYLFKAREEMRYILPDVFPAFIPVSITESVLKHAQNHGFK--IVSHSHTP 281 A+ A + +++LF+ ++ + + + +++ + G K V + Sbjct: 179 ALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDETERL 238 Query: 282 NQLVR 286 L++ Sbjct: 239 GSLLQ 243 >d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 90 Score = 24.8 bits (54), Expect = 9.1 Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 3/41 (7%) Query: 76 RLQWWKDIFESSTKGLIAESISPFS---VELLSIVRQYDLP 113 ++ + S + + I+ V + +++L Sbjct: 49 EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE 89 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.328 0.141 0.423 Gapped Lambda K H 0.267 0.0615 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,131,993 Number of extensions: 53223 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 11 Length of query: 299 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 214 Effective length of database: 1,240,546 Effective search space: 265476844 Effective search space used: 265476844 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 53 (24.4 bits)