RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780161|ref|YP_003064574.1| phytoene synthase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (299 letters)



>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 333

 Score = 79.0 bits (194), Expect = 4e-16
 Identities = 21/246 (8%), Positives = 59/246 (23%), Gaps = 23/246 (9%)

Query: 28  LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDT-----ARNPITRDMRLQWWKD 82
           L                  R ++   Y      +R  DT       +   +   L  +  
Sbjct: 10  LNQTSRSFAAVIQALDGEMRNAVCIFYLV----LRALDTLEDDMTISVEKKVPLLHNFHS 65

Query: 83  IFESSTKGLIA---------ESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSI 133
                    +          E     S+E  ++  +Y          +     +  +  +
Sbjct: 66  FLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHV 125

Query: 134 FDCKQFEHYAFRISSRLIHLATMIL-----DSERYSASLRVIKYAGIAQFIGQLICQLPI 188
              ++++ Y   ++  +    + +      +              G+      +I     
Sbjct: 126 TSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLE 185

Query: 189 HYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP 248
               G+ ++P ++          F   +N D     +       L ++      +  +  
Sbjct: 186 DQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 245

Query: 249 DVFPAF 254
                F
Sbjct: 246 QSVFNF 251


>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
           (Mytilus edulis) [TaxId: 6550]}
          Length = 275

 Score = 26.7 bits (58), Expect = 2.2
 Identities = 24/190 (12%), Positives = 50/190 (26%), Gaps = 29/190 (15%)

Query: 106 IVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSA 165
           +    D+P     D      + ++N++    ++ E            L   +        
Sbjct: 71  MSDASDVPILLDADTG----YGNFNNARRLVRKLE----DRGVAGACLEDKLFPKTNSLH 122

Query: 166 SLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAI 225
             R    A I +F  ++                           E+F++G   D      
Sbjct: 123 DGRAQPLADIEEFALKIKACKDSQTDPDFCIV---------ARVEAFIAGWGLDEALKRA 173

Query: 226 KIFAELGLKYLF----KAREEMRYILPDVFPAFIPV-----SITESVLKHAQNHGFKIVS 276
           + +   G   +     KA           +    PV        ++   H ++ G  +V 
Sbjct: 174 EAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVI 233

Query: 277 HSHTPNQLVR 286
                N  +R
Sbjct: 234 W---ANHNLR 240


>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia
           eutropha [TaxId: 106590]}
          Length = 192

 Score = 26.1 bits (57), Expect = 3.8
 Identities = 13/48 (27%), Positives = 15/48 (31%)

Query: 236 LFKAREEMRYILPDVFPAFIPVSITESVLKHAQNHGFKIVSHSHTPNQ 283
           L          LPD F    P    + +L       F IVS    P Q
Sbjct: 32  LLARLVARDDWLPDAFAQPHPEYYQQMLLHCDSAERFSIVSFVWGPGQ 79


>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 25.5 bits (55), Expect = 6.6
 Identities = 8/65 (12%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 224 AIKIFAELGLKYLFKAREEMRYILPDVFPAFIPVSITESVLKHAQNHGFK--IVSHSHTP 281
           A+   A + +++LF+  ++ + +   +      +++        +  G K   V  +   
Sbjct: 179 ALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDETERL 238

Query: 282 NQLVR 286
             L++
Sbjct: 239 GSLLQ 243


>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia
           coli [TaxId: 562]}
          Length = 90

 Score = 24.8 bits (54), Expect = 9.1
 Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 76  RLQWWKDIFESSTKGLIAESISPFS---VELLSIVRQYDLP 113
            ++      + S    + + I+      V     + +++L 
Sbjct: 49  EMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLE 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,131,993
Number of extensions: 53223
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 11
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)