Query gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 36 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Sun May 22 18:22:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780162.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1lrr_A SEQA protein; protein- 12.5 39 0.0011 16.8 -0.6 20 17-36 22-41 (131) 2 >1j3e_A SEQA protein; protein- 10.6 48 0.0014 16.3 -0.6 20 17-36 6-25 (115) 3 >3fmt_A Protein SEQA; protein- 10.1 52 0.0015 16.2 -0.6 20 17-36 12-31 (121) 4 >2i2o_A EIF4G-like protein; pr 7.3 2.3E+02 0.0067 13.3 1.9 21 8-28 35-55 (122) 5 >2a26_A Calcyclin-binding prot 6.8 93 0.0028 15.1 -0.5 16 15-30 32-47 (50) 6 >1oxj_A RNA-binding protein sm 6.4 2.6E+02 0.0076 13.1 2.0 22 9-30 74-95 (109) 7 >2z2q_B Coat protein gamma; wi 4.8 2.3E+02 0.0069 13.3 0.5 11 25-35 17-27 (44) 8 >1nov_D Nodamura virus coat pr 4.7 2.2E+02 0.0066 13.4 0.4 11 25-35 17-27 (44) 9 >2yrt_A Chord containing prote 4.5 2.8E+02 0.0082 12.9 0.8 19 14-32 22-40 (49) 10 >2fsj_A Hypothetical protein T 4.3 2.3E+02 0.0068 13.3 0.2 14 19-32 28-41 (66) No 1 >>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} (A:) Probab=12.49 E-value=39 Score=16.75 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.2 Q ss_pred HHHHHHHHHHCCCCCCCCCC Q ss_conf 76665444421699854659 Q gi|254780162|r 17 VEKSVLEDEFSNQPGSVGCF 36 (36) Q Consensus 17 veksvledefsnqpgsvgcf 36 (36) ++.-++.|||.+|.+.|+-| T Consensus 22 ~~~ll~sde~a~q~kaV~RF 41 (131) T 1lrr_A 22 MRELLLSDEYAEQKRAVNRF 41 (131) T ss_dssp HHHHHHSHHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99998089999987079999 No 2 >>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} (A:) Probab=10.63 E-value=48 Score=16.32 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=14.3 Q ss_pred HHHHHHHHHHCCCCCCCCCC Q ss_conf 76665444421699854659 Q gi|254780162|r 17 VEKSVLEDEFSNQPGSVGCF 36 (36) Q Consensus 17 veksvledefsnqpgsvgcf 36 (36) +..-+..|||..|.+.|+-| T Consensus 6 ~~~ll~sde~a~q~~aV~RF 25 (115) T 1j3e_A 6 MRELLLSDEYAEQKRAVNRF 25 (115) T ss_dssp HHHHHHSHHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999189999977059999 No 3 >>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli} (A:42-162) Probab=10.10 E-value=52 Score=16.18 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=14.7 Q ss_pred HHHHHHHHHHCCCCCCCCCC Q ss_conf 76665444421699854659 Q gi|254780162|r 17 VEKSVLEDEFSNQPGSVGCF 36 (36) Q Consensus 17 veksvledefsnqpgsvgcf 36 (36) +..-++.|||..|.+.|+-| T Consensus 12 ~~~ll~sde~a~q~kaV~RF 31 (121) T 3fmt_A 12 MRELLLSDEYAEQKRAVNRF 31 (121) T ss_dssp HHHHHHSHHHHHCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99998099999987189999 No 4 >>2i2o_A EIF4G-like protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics, unknown function; HET: MSE; 1.92A {Danio rerio} (A:1-122) Probab=7.30 E-value=2.3e+02 Score=13.34 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCC Q ss_conf 899999998766654444216 Q gi|254780162|r 8 KMMYVFSCIVEKSVLEDEFSN 28 (36) Q Consensus 8 kmmyvfsciveksvledefsn 28 (36) .+..+...|.||++.|-.|+. T Consensus 35 ~L~~vv~~IfeKAi~Ep~f~~ 55 (122) T 2i2o_A 35 DLEKVSSVIVDQSLKDQVFSR 55 (122) T ss_dssp CHHHHHHHHHHHHTTCHHHHH T ss_pred HHHHHHHHHHHHHHHCHHHHH T ss_conf 799999999999971675699 No 5 >>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} (A:) Probab=6.75 E-value=93 Score=15.05 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 9876665444421699 Q gi|254780162|r 15 CIVEKSVLEDEFSNQP 30 (36) Q Consensus 15 civeksvledefsnqp 30 (36) -..||+-+|.|..|+| T Consensus 32 Lt~Ek~kletEIknk~ 47 (50) T 2a26_A 32 LTAEKSKIETEIKNKM 47 (50) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999889999998887 No 6 >>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} (A:65-173) Probab=6.37 E-value=2.6e+02 Score=13.10 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999876665444421699 Q gi|254780162|r 9 MMYVFSCIVEKSVLEDEFSNQP 30 (36) Q Consensus 9 mmyvfsciveksvledefsnqp 30 (36) -+-+|--|+||+.-.+.|++|- T Consensus 74 ~l~~~l~llek~l~hEAFt~qk 95 (109) T 1oxj_A 74 TLGVLMWILDRSIHNEAFMNHA 95 (109) T ss_dssp HHHHHHHHHHHHHTCGGGGGGH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999877788899 No 7 >>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 2bbv_D (B:) Probab=4.79 E-value=2.3e+02 Score=13.29 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.3 Q ss_pred HHCCCCCCCCC Q ss_conf 42169985465 Q gi|254780162|r 25 EFSNQPGSVGC 35 (36) Q Consensus 25 efsnqpgsvgc 35 (36) --||-||.||- T Consensus 17 ~AS~vPGPvG~ 27 (44) T 2z2q_B 17 AASNIPGPIGV 27 (44) T ss_pred HHCCCCCCHHH T ss_conf 86059985002 No 8 >>1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus} (D:) Probab=4.74 E-value=2.2e+02 Score=13.38 Aligned_cols=11 Identities=45% Similarity=0.582 Sum_probs=8.3 Q ss_pred HHCCCCCCCCC Q ss_conf 42169985465 Q gi|254780162|r 25 EFSNQPGSVGC 35 (36) Q Consensus 25 efsnqpgsvgc 35 (36) --||-||.+|- T Consensus 17 ~AS~vPGPvG~ 27 (44) T 1nov_D 17 FASTIPGPVGV 27 (44) T ss_pred HHHCCCCCHHH T ss_conf 88339974147 No 9 >>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:27-75) Probab=4.52 E-value=2.8e+02 Score=12.95 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 9987666544442169985 Q gi|254780162|r 14 SCIVEKSVLEDEFSNQPGS 32 (36) Q Consensus 14 sciveksvledefsnqpgs 32 (36) ||--.++.-=|||-+|||- T Consensus 22 sCC~k~~~DF~~Fl~ipgC 40 (49) T 2yrt_A 22 SCCKRRTTDFSDFLSIVGC 40 (49) T ss_dssp SSSSCEESSHHHHTTCCCS T ss_pred CCCCCCCCCHHHHHCCCCC T ss_conf 6889876587897357886 No 10 >>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} (A:186-226,A:295-319) Probab=4.29 E-value=2.3e+02 Score=13.29 Aligned_cols=14 Identities=43% Similarity=0.442 Sum_probs=10.7 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 66544442169985 Q gi|254780162|r 19 KSVLEDEFSNQPGS 32 (36) Q Consensus 19 ksvledefsnqpgs 32 (36) ..+.||.||-|.|- T Consensus 28 epiie~sfs~q~gi 41 (66) T 2fsj_A 28 EPVVELSFSLQIGV 41 (66) T ss_dssp EECGGGCEEESCCH T ss_pred EEEEEEECCCCHHH T ss_conf 59977616743689 Done!