Query         gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 36
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Sun May 22 18:22:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780162.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1lrr_A SEQA protein; protein-  12.5      39  0.0011   16.8  -0.6   20   17-36     22-41  (131)
  2 >1j3e_A SEQA protein; protein-  10.6      48  0.0014   16.3  -0.6   20   17-36      6-25  (115)
  3 >3fmt_A Protein SEQA; protein-  10.1      52  0.0015   16.2  -0.6   20   17-36     12-31  (121)
  4 >2i2o_A EIF4G-like protein; pr   7.3 2.3E+02  0.0067   13.3   1.9   21    8-28     35-55  (122)
  5 >2a26_A Calcyclin-binding prot   6.8      93  0.0028   15.1  -0.5   16   15-30     32-47  (50)
  6 >1oxj_A RNA-binding protein sm   6.4 2.6E+02  0.0076   13.1   2.0   22    9-30     74-95  (109)
  7 >2z2q_B Coat protein gamma; wi   4.8 2.3E+02  0.0069   13.3   0.5   11   25-35     17-27  (44)
  8 >1nov_D Nodamura virus coat pr   4.7 2.2E+02  0.0066   13.4   0.4   11   25-35     17-27  (44)
  9 >2yrt_A Chord containing prote   4.5 2.8E+02  0.0082   12.9   0.8   19   14-32     22-40  (49)
 10 >2fsj_A Hypothetical protein T   4.3 2.3E+02  0.0068   13.3   0.2   14   19-32     28-41  (66)

No 1  
>>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} (A:)
Probab=12.49  E-value=39  Score=16.75  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             76665444421699854659
Q gi|254780162|r   17 VEKSVLEDEFSNQPGSVGCF   36 (36)
Q Consensus        17 veksvledefsnqpgsvgcf   36 (36)
                      ++.-++.|||.+|.+.|+-|
T Consensus        22 ~~~ll~sde~a~q~kaV~RF   41 (131)
T 1lrr_A           22 MRELLLSDEYAEQKRAVNRF   41 (131)
T ss_dssp             HHHHHHSHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99998089999987079999


No 2  
>>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} (A:)
Probab=10.63  E-value=48  Score=16.32  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             76665444421699854659
Q gi|254780162|r   17 VEKSVLEDEFSNQPGSVGCF   36 (36)
Q Consensus        17 veksvledefsnqpgsvgcf   36 (36)
                      +..-+..|||..|.+.|+-|
T Consensus         6 ~~~ll~sde~a~q~~aV~RF   25 (115)
T 1j3e_A            6 MRELLLSDEYAEQKRAVNRF   25 (115)
T ss_dssp             HHHHHHSHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999189999977059999


No 3  
>>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli} (A:42-162)
Probab=10.10  E-value=52  Score=16.18  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             76665444421699854659
Q gi|254780162|r   17 VEKSVLEDEFSNQPGSVGCF   36 (36)
Q Consensus        17 veksvledefsnqpgsvgcf   36 (36)
                      +..-++.|||..|.+.|+-|
T Consensus        12 ~~~ll~sde~a~q~kaV~RF   31 (121)
T 3fmt_A           12 MRELLLSDEYAEQKRAVNRF   31 (121)
T ss_dssp             HHHHHHSHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99998099999987189999


No 4  
>>2i2o_A EIF4G-like protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics, unknown function; HET: MSE; 1.92A {Danio rerio} (A:1-122)
Probab=7.30  E-value=2.3e+02  Score=13.34  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC
Q ss_conf             899999998766654444216
Q gi|254780162|r    8 KMMYVFSCIVEKSVLEDEFSN   28 (36)
Q Consensus         8 kmmyvfsciveksvledefsn   28 (36)
                      .+..+...|.||++.|-.|+.
T Consensus        35 ~L~~vv~~IfeKAi~Ep~f~~   55 (122)
T 2i2o_A           35 DLEKVSSVIVDQSLKDQVFSR   55 (122)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCHHHHH
T ss_conf             799999999999971675699


No 5  
>>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} (A:)
Probab=6.75  E-value=93  Score=15.05  Aligned_cols=16  Identities=38%  Similarity=0.403  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             9876665444421699
Q gi|254780162|r   15 CIVEKSVLEDEFSNQP   30 (36)
Q Consensus        15 civeksvledefsnqp   30 (36)
                      -..||+-+|.|..|+|
T Consensus        32 Lt~Ek~kletEIknk~   47 (50)
T 2a26_A           32 LTAEKSKIETEIKNKM   47 (50)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999889999998887


No 6  
>>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} (A:65-173)
Probab=6.37  E-value=2.6e+02  Score=13.10  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999876665444421699
Q gi|254780162|r    9 MMYVFSCIVEKSVLEDEFSNQP   30 (36)
Q Consensus         9 mmyvfsciveksvledefsnqp   30 (36)
                      -+-+|--|+||+.-.+.|++|-
T Consensus        74 ~l~~~l~llek~l~hEAFt~qk   95 (109)
T 1oxj_A           74 TLGVLMWILDRSIHNEAFMNHA   95 (109)
T ss_dssp             HHHHHHHHHHHHHTCGGGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999877788899


No 7  
>>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 2bbv_D (B:)
Probab=4.79  E-value=2.3e+02  Score=13.29  Aligned_cols=11  Identities=45%  Similarity=0.791  Sum_probs=8.3

Q ss_pred             HHCCCCCCCCC
Q ss_conf             42169985465
Q gi|254780162|r   25 EFSNQPGSVGC   35 (36)
Q Consensus        25 efsnqpgsvgc   35 (36)
                      --||-||.||-
T Consensus        17 ~AS~vPGPvG~   27 (44)
T 2z2q_B           17 AASNIPGPIGV   27 (44)
T ss_pred             HHCCCCCCHHH
T ss_conf             86059985002


No 8  
>>1nov_D Nodamura virus coat proteins; insect virus, icosahedral virus; 3.50A {Nodamura virus} (D:)
Probab=4.74  E-value=2.2e+02  Score=13.38  Aligned_cols=11  Identities=45%  Similarity=0.582  Sum_probs=8.3

Q ss_pred             HHCCCCCCCCC
Q ss_conf             42169985465
Q gi|254780162|r   25 EFSNQPGSVGC   35 (36)
Q Consensus        25 efsnqpgsvgc   35 (36)
                      --||-||.+|-
T Consensus        17 ~AS~vPGPvG~   27 (44)
T 1nov_D           17 FASTIPGPVGV   27 (44)
T ss_pred             HHHCCCCCHHH
T ss_conf             88339974147


No 9  
>>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:27-75)
Probab=4.52  E-value=2.8e+02  Score=12.95  Aligned_cols=19  Identities=21%  Similarity=0.345  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             9987666544442169985
Q gi|254780162|r   14 SCIVEKSVLEDEFSNQPGS   32 (36)
Q Consensus        14 sciveksvledefsnqpgs   32 (36)
                      ||--.++.-=|||-+|||-
T Consensus        22 sCC~k~~~DF~~Fl~ipgC   40 (49)
T 2yrt_A           22 SCCKRRTTDFSDFLSIVGC   40 (49)
T ss_dssp             SSSSCEESSHHHHTTCCCS
T ss_pred             CCCCCCCCCHHHHHCCCCC
T ss_conf             6889876587897357886


No 10 
>>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} (A:186-226,A:295-319)
Probab=4.29  E-value=2.3e+02  Score=13.29  Aligned_cols=14  Identities=43%  Similarity=0.442  Sum_probs=10.7

Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             66544442169985
Q gi|254780162|r   19 KSVLEDEFSNQPGS   32 (36)
Q Consensus        19 ksvledefsnqpgs   32 (36)
                      ..+.||.||-|.|-
T Consensus        28 epiie~sfs~q~gi   41 (66)
T 2fsj_A           28 EPVVELSFSLQIGV   41 (66)
T ss_dssp             EECGGGCEEESCCH
T ss_pred             EEEEEEECCCCHHH
T ss_conf             59977616743689


Done!