Query gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 36
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Sun May 22 19:19:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780162.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j3ea_ d.228.1.1 (A:) Replica 10.8 19 0.0014 16.4 -0.6 20 17-36 6-25 (115)
2 d1q5wa_ g.41.11.1 (A:) Npl4 {R 7.4 55 0.004 14.3 0.6 12 24-35 12-23 (31)
3 d1oxja2 a.118.1.13 (A:656-763) 4.1 1.5E+02 0.011 12.4 2.0 22 9-30 74-95 (108)
4 d2a26a1 a.2.16.1 (A:1-47) Calc 3.2 1.3E+02 0.0092 12.7 0.0 15 15-29 29-43 (47)
5 d2gf4a1 a.8.10.1 (A:1-89) Nypo 2.6 2.1E+02 0.015 11.8 0.6 20 12-32 57-76 (89)
6 d1ohea1 c.45.1.1 (A:42-198) Pr 2.5 2.3E+02 0.017 11.5 2.1 25 5-29 51-75 (157)
7 d2i8ga1 d.107.1.4 (A:2-148) Hy 1.8 2.3E+02 0.017 11.6 -0.1 8 26-33 125-132 (147)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 1.6 3.4E+02 0.024 10.8 1.2 12 6-17 20-31 (34)
9 d1jqoa_ c.1.12.3 (A:) Phosphoe 1.5 3.5E+02 0.025 10.8 0.4 6 2-7 497-502 (936)
10 d1yj5a1 c.108.1.9 (A:144-338) 1.5 1.8E+02 0.013 12.0 -1.1 6 26-31 72-77 (195)
No 1
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=10.85 E-value=19 Score=16.37 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCCCCCCC
Q ss_conf 76665444421699854659
Q gi|254780162|r 17 VEKSVLEDEFSNQPGSVGCF 36 (36)
Q Consensus 17 veksvledefsnqpgsvgcf 36 (36)
+..-.+.|||.+|.+.|+-|
T Consensus 6 ~~~ll~sde~a~~~~av~RF 25 (115)
T d1j3ea_ 6 MRELLLSDEYAEQKRAVNRF 25 (115)
T ss_dssp HHHHHHSHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999189999876159999
No 2
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.39 E-value=55 Score=14.33 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=9.1
Q ss_pred HHHCCCCCCCCC
Q ss_conf 442169985465
Q gi|254780162|r 24 DEFSNQPGSVGC 35 (36)
Q Consensus 24 defsnqpgsvgc 35 (36)
-.|-||||.-.|
T Consensus 12 CTf~N~pgtd~C 23 (31)
T d1q5wa_ 12 CTFMNQPGTGHC 23 (31)
T ss_dssp SCCEECTTCSBC
T ss_pred EEEECCCCCCCC
T ss_conf 146459998823
No 3
>d1oxja2 a.118.1.13 (A:656-763) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}
Probab=4.14 E-value=1.5e+02 Score=12.37 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999876665444421699
Q gi|254780162|r 9 MMYVFSCIVEKSVLEDEFSNQP 30 (36)
Q Consensus 9 mmyvfsciveksvledefsnqp 30 (36)
-+-+|--|.||+...+.|+||.
T Consensus 74 ~l~~yl~llek~l~hEAF~~~k 95 (108)
T d1oxja2 74 TLGVLMWILDRSIHNEAFMNHA 95 (108)
T ss_dssp HHHHHHHHHHHHHTCGGGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999989999899
No 4
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.16 E-value=1.3e+02 Score=12.72 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 987666544442169
Q gi|254780162|r 15 CIVEKSVLEDEFSNQ 29 (36)
Q Consensus 15 civeksvledefsnq 29 (36)
-..||+-+|.|.+|+
T Consensus 29 Lt~Ek~kletEik~k 43 (47)
T d2a26a1 29 LTAEKSKIETEIKNK 43 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999988999999888
No 5
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c {Halobacterium salinarium [TaxId: 2242]}
Probab=2.55 E-value=2.1e+02 Score=11.76 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999987666544442169985
Q gi|254780162|r 12 VFSCIVEKSVLEDEFSNQPGS 32 (36)
Q Consensus 12 vfsciveksvledefsnqpgs 32 (36)
+.+-..-+.+-|+|||. |+.
T Consensus 57 ~L~~~Ia~~m~e~e~s~-a~~ 76 (89)
T d2gf4a1 57 LLGNALAAAMSEDEFSS-AGR 76 (89)
T ss_dssp HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHCCCCCC-HHH
T ss_conf 99999999983123564-537
No 6
>d1ohea1 c.45.1.1 (A:42-198) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.48 E-value=2.3e+02 Score=11.53 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=17.7
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4118999999987666544442169
Q gi|254780162|r 5 ISMKMMYVFSCIVEKSVLEDEFSNQ 29 (36)
Q Consensus 5 ismkmmyvfsciveksvledefsnq 29 (36)
+.+.|.|-|.|.+.+-.-+.+.++.
T Consensus 51 LNL~~lyrfc~~l~~~L~~~~~~~k 75 (157)
T d1ohea1 51 LNLAMVYRYCCKINKKLKSITMLRK 75 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGTTS
T ss_pred CHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf 1499999999999999739454297
No 7
>d2i8ga1 d.107.1.4 (A:2-148) Hypothetical protein DIP2269 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=1.81 E-value=2.3e+02 Score=11.59 Aligned_cols=8 Identities=50% Similarity=0.630 Sum_probs=0.0
Q ss_pred HCCCCCCC
Q ss_conf 21699854
Q gi|254780162|r 26 FSNQPGSV 33 (36)
Q Consensus 26 fsnqpgsv 33 (36)
||||+-|+
T Consensus 125 ~snQ~Qsv 132 (147)
T d2i8ga1 125 WSNQQQSL 132 (147)
T ss_dssp EESSSCHH
T ss_pred ECCCCCHH
T ss_conf 73874126
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=1.60 E-value=3.4e+02 Score=10.83 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=0.0
Q ss_pred EEHHHHHHHHHH
Q ss_conf 118999999987
Q gi|254780162|r 6 SMKMMYVFSCIV 17 (36)
Q Consensus 6 smkmmyvfsciv 17 (36)
|..|.+||-...
T Consensus 20 slamlfvfiali 31 (34)
T d1xmeb2 20 SLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 9
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}
Probab=1.53 E-value=3.5e+02 Score=10.76 Aligned_cols=6 Identities=83% Similarity=1.243 Sum_probs=0.0
Q ss_pred EEEEEE
Q ss_conf 056411
Q gi|254780162|r 2 TYIISM 7 (36)
Q Consensus 2 tyiism 7 (36)
.|||||
T Consensus 497 ~YIISm 502 (936)
T d1jqoa_ 497 PYIISM 502 (936)
T ss_dssp EEEETT
T ss_pred CCHHCC
T ss_conf 203115
No 10
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.49 E-value=1.8e+02 Score=12.02 Aligned_cols=6 Identities=67% Similarity=1.065 Sum_probs=0.0
Q ss_pred HCCCCC
Q ss_conf 216998
Q gi|254780162|r 26 FSNQPG 31 (36)
Q Consensus 26 fsnqpg 31 (36)
+|||+|
T Consensus 72 vTNQ~g 77 (195)
T d1yj5a1 72 FTNQMG 77 (195)
T ss_dssp EEECHH
T ss_pred ECCCCH
T ss_conf 527630
Done!