RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780162|ref|YP_003064575.1| hypothetical protein
CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62]
         (36 letters)



>gnl|CDD|183024 PRK11187, PRK11187, replication initiation regulator SeqA;
          Provisional.
          Length = 182

 Score = 24.8 bits (55), Expect = 5.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 17 VEKSVLEDEFSNQPGSVGCF 36
          V + +L DE++ Q  +V  F
Sbjct: 73 VRELLLSDEYAEQKKAVNRF 92


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0796    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 516,790
Number of extensions: 13196
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 3
Length of query: 36
Length of database: 5,994,473
Length adjustment: 10
Effective length of query: 26
Effective length of database: 5,778,393
Effective search space: 150238218
Effective search space used: 150238218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (22.9 bits)