BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62] (36 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780162|ref|YP_003064575.1| hypothetical protein CLIBASIA_00225 [Candidatus Liberibacter asiaticus str. psy62] Length = 36 Score = 75.1 bits (183), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 36/36 (100%), Positives = 36/36 (100%) Query: 1 MTYIISMKMMYVFSCIVEKSVLEDEFSNQPGSVGCF 36 MTYIISMKMMYVFSCIVEKSVLEDEFSNQPGSVGCF Sbjct: 1 MTYIISMKMMYVFSCIVEKSVLEDEFSNQPGSVGCF 36 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 21.6 bits (44), Expect = 2.5, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%) Query: 6 SMKMMYVFSCIVEKSVLEDEFSNQ 29 S+K+ Y S KS+LED F N+ Sbjct: 1037 SLKVQYETS----KSILEDRFKNK 1056 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.327 0.137 0.409 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,311 Number of Sequences: 1233 Number of extensions: 347 Number of successful extensions: 2 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 36 length of database: 328,796 effective HSP length: 10 effective length of query: 26 effective length of database: 316,466 effective search space: 8228116 effective search space used: 8228116 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 31 (16.5 bits)