HHsearch alignment for GI: 254780163 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=98.40 E-value=1.8e-05 Score=58.50 Aligned_cols=97 Identities=30% Similarity=0.512 Sum_probs=71.1
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCC--------CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCC
Q ss_conf 246653458999999999877520445657--------874068861432003889999987304773377206886124
Q gi|254780163|r 475 LGTVVYGQEEAIKKLSSSIKIARAGLSDPN--------KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMER 546 (798)
Q Consensus 475 l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~--------rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~ 546 (798)
T Consensus 148 ~F~DVAG~dEakeel~EiVdf----Lk~p~ky~~lGakiPkGv-lLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDF----LKNPKKYQALGAKIPKGV-LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred CHHHHCCCHHHHHHHHHHHHH----HHCCHHHHHCCCCCCCCE-EEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHH
T ss_conf 756641867999999999998----638556675235345652-685599987278999984546898353034446443
Q ss_pred CCCCHHCCCCCHHCCCCCCCCCCH-HHHHCCCEEEEECCHHH
Q ss_conf 653011047800025644431003-55515851777404455
Q gi|254780163|r 547 HAVSRLIGAPPGYVGFGQGGILAD-SVDQNPYSVVLLDEIEK 587 (798)
Q Consensus 547 ~~vs~LiGappGYvG~~egg~Lte-~vr~~P~sVvl~DEiEK 587 (798)
T Consensus 223 -----fVGvGAsRV-----RdLF~qAkk~aP-~IIFIDEiDA 253 (596)
T COG0465 223 -----FVGVGASRV-----RDLFEQAKKNAP-CIIFIDEIDA 253 (596)
T ss_pred -----HCCCCCHHH-----HHHHHHHHCCCC-CEEEEEHHHH
T ss_conf -----147883888-----999998551599-6698763433