HHsearch alignment for GI: 254780163 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=99.80 E-value=1.5e-17 Score=145.26 Aligned_cols=292 Identities=25% Similarity=0.376 Sum_probs=204.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHH
Q ss_conf 01555646798899865333321144322113657899986631024531011100112334210000246653458999
Q gi|254780163|r 407 FTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAI 486 (798)
Q Consensus 407 i~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai 486 (798)
T Consensus 259 ie~~~~p~evkek~~~-----El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVK 332 (782)
T COG0466 259 IEKLKLPKEAKEKAEK-----ELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVK 332 (782)
T ss_pred HHHCCCCHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCCCCHHHH
T ss_conf 7516999899999999-----999985079999168899899999982887655421-3229999987443556711689
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC----CHHCCCCCHHCCC
Q ss_conf 999999877520445657874068861432003889999987304773377206886124653----0110478000256
Q gi|254780163|r 487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV----SRLIGAPPGYVGF 562 (798)
Q Consensus 487 ~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v----s~LiGappGYvG~ 562 (798)
T Consensus 333 eRIlEyLAV~~l-~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPG---- 405 (782)
T COG0466 333 ERILEYLAVQKL-TKKLKGPI--LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG---- 405 (782)
T ss_pred HHHHHHHHHHHH-HCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH----
T ss_conf 999999999986-14678857--99978998870118999999958977999547654277753553123356872----
Q ss_pred CCCCCCCHHHHH--CCCEEEEECCHHHCCHH----HHHHHHHHHHH---HHCCCCC-CCEECCCCEEEEEECCCCHHHHH
Q ss_conf 444310035551--58517774044550289----99999998777---5021779-97761254299994242145533
Q gi|254780163|r 563 GQGGILADSVDQ--NPYSVVLLDEIEKSHPD----VLNILLQIMDY---GILTDQS-GKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 563 ~egg~Lte~vr~--~P~sVvl~DEiEKAh~~----v~~~llqild~---G~ltd~~-Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
T Consensus 406 ----rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl----- 476 (782)
T COG0466 406 ----KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL----- 476 (782)
T ss_pred ----HHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCC-----
T ss_conf ----89999998677687478640333167777886888886269765676122201676644325888603751-----
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC---CEEEECHHHHHHH
Q ss_conf 0368988211148899999872887881776828962889999999999999999999998669---8899988999999
Q gi|254780163|r 633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKG---ISFHFSEEVINWL 709 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~---i~l~~~~~~~~~l 709 (798)
T Consensus 477 --------------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ai~~i 533 (782)
T COG0466 477 --------------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEAIKDI 533 (782)
T ss_pred --------------------CCCCHHHHCCE-EEEEECCCCHHHHHHHHHHHC--CHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf --------------------32986784303-056426888699999999844--5689997599823355658999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 971898101532679999986235999999629676
Q gi|254780163|r 710 VSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLK 745 (798)
Q Consensus 710 ~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~ 745 (798)
T Consensus 534 I~-~YTREAGVR~LeR~i~ki~-RK~~~~i~~~~~k 567 (782)
T COG0466 534 IR-YYTREAGVRNLEREIAKIC-RKAAKKILLKKEK 567 (782)
T ss_pred HH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCC
T ss_conf 99-8767621038999999999-9999999725756