HHsearch alignment for GI: 254780163 and conserved domain: COG0466

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=99.80  E-value=1.5e-17  Score=145.26  Aligned_cols=292  Identities=25%  Similarity=0.376  Sum_probs=204.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHH
Q ss_conf             01555646798899865333321144322113657899986631024531011100112334210000246653458999
Q gi|254780163|r  407 FTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAI  486 (798)
Q Consensus       407 i~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai  486 (798)
T Consensus       259 ie~~~~p~evkek~~~-----El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVK  332 (782)
T COG0466         259 IEKLKLPKEAKEKAEK-----ELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVK  332 (782)
T ss_pred             HHHCCCCHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCCCCHHHH
T ss_conf             7516999899999999-----999985079999168899899999982887655421-3229999987443556711689


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC----CHHCCCCCHHCCC
Q ss_conf             999999877520445657874068861432003889999987304773377206886124653----0110478000256
Q gi|254780163|r  487 KKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV----SRLIGAPPGYVGF  562 (798)
Q Consensus       487 ~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v----s~LiGappGYvG~  562 (798)
T Consensus       333 eRIlEyLAV~~l-~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPG----  405 (782)
T COG0466         333 ERILEYLAVQKL-TKKLKGPI--LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG----  405 (782)
T ss_pred             HHHHHHHHHHHH-HCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCH----
T ss_conf             999999999986-14678857--99978998870118999999958977999547654277753553123356872----


Q ss_pred             CCCCCCCHHHHH--CCCEEEEECCHHHCCHH----HHHHHHHHHHH---HHCCCCC-CCEECCCCEEEEEECCCCHHHHH
Q ss_conf             444310035551--58517774044550289----99999998777---5021779-97761254299994242145533
Q gi|254780163|r  563 GQGGILADSVDQ--NPYSVVLLDEIEKSHPD----VLNILLQIMDY---GILTDQS-GKKISFRNVILIMTTNAGALEMS  632 (798)
Q Consensus       563 ~egg~Lte~vr~--~P~sVvl~DEiEKAh~~----v~~~llqild~---G~ltd~~-Gr~vdf~n~iii~TsN~G~~~~~  632 (798)
T Consensus       406 ----rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl-----  476 (782)
T COG0466         406 ----KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL-----  476 (782)
T ss_pred             ----HHHHHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCC-----
T ss_conf             ----89999998677687478640333167777886888886269765676122201676644325888603751-----


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC---CEEEECHHHHHHH
Q ss_conf             0368988211148899999872887881776828962889999999999999999999998669---8899988999999
Q gi|254780163|r  633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKG---ISFHFSEEVINWL  709 (798)
Q Consensus       633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~---i~l~~~~~~~~~l  709 (798)
T Consensus       477 --------------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ai~~i  533 (782)
T COG0466         477 --------------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEAIKDI  533 (782)
T ss_pred             --------------------CCCCHHHHCCE-EEEEECCCCHHHHHHHHHHHC--CHHHHHHCCCCCCCEEECHHHHHHH
T ss_conf             --------------------32986784303-056426888699999999844--5689997599823355658999999


Q ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             971898101532679999986235999999629676
Q gi|254780163|r  710 VSHGYDVKMGARPLERIIKEHVKVPLADEILFGKLK  745 (798)
Q Consensus       710 ~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~  745 (798)
T Consensus       534 I~-~YTREAGVR~LeR~i~ki~-RK~~~~i~~~~~k  567 (782)
T COG0466         534 IR-YYTREAGVRNLEREIAKIC-RKAAKKILLKKEK  567 (782)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCC
T ss_conf             99-8767621038999999999-9999999725756